miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 14313 0.67 0.804373
Target:  5'- aAGCGCaGGCCGACGCcgacaagcaggugAACGCGgcGa -3'
miRNA:   3'- cUCGUGaCUGGUUGCG-------------UUGUGCuuCc -5'
28091 5' -50.9 NC_005887.1 + 40360 0.66 0.843693
Target:  5'- cGAGCGC-GGCCGugcCGCucgucgcGCGCGAGGa -3'
miRNA:   3'- -CUCGUGaCUGGUu--GCGu------UGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 4667 0.73 0.503679
Target:  5'- -cGCGCaGACCGcuGCGCAGacgGCGAGGGu -3'
miRNA:   3'- cuCGUGaCUGGU--UGCGUUg--UGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 3080 0.73 0.482038
Target:  5'- aGGCGCUGaacGCCGACcacgGCcGCAUGAAGGa -3'
miRNA:   3'- cUCGUGAC---UGGUUG----CGuUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 1233 0.67 0.834455
Target:  5'- cGGGCGCUG-CgCGGCGCucagcACGCGAAa- -3'
miRNA:   3'- -CUCGUGACuG-GUUGCGu----UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 5026 0.67 0.824982
Target:  5'- aGGCGCaGACCGAaGCca-ACGAAGGc -3'
miRNA:   3'- cUCGUGaCUGGUUgCGuugUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 17446 0.74 0.43004
Target:  5'- cGAGCGCUacGGCCcgaauccgacGCGCAACAUGAAGa -3'
miRNA:   3'- -CUCGUGA--CUGGu---------UGCGUUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 1421 0.67 0.805376
Target:  5'- cGGCAa-GACgAACGCGagcuGCugGAAGGc -3'
miRNA:   3'- cUCGUgaCUGgUUGCGU----UGugCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 40643 0.68 0.784969
Target:  5'- aGGCACUGACgAGCGC-GCGcCGAu-- -3'
miRNA:   3'- cUCGUGACUGgUUGCGuUGU-GCUucc -5'
28091 5' -50.9 NC_005887.1 + 16768 0.71 0.616813
Target:  5'- uGGGCGC-GAUCGACGCG--AUGAAGGu -3'
miRNA:   3'- -CUCGUGaCUGGUUGCGUugUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 15835 0.7 0.628371
Target:  5'- cAGCGCUuGCgCGGCGCGAU-CGAGGGa -3'
miRNA:   3'- cUCGUGAcUG-GUUGCGUUGuGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 26211 0.66 0.869899
Target:  5'- cGGCGgUGGCCGGCcuGCAGCugGcgcacGGGu -3'
miRNA:   3'- cUCGUgACUGGUUG--CGUUGugCu----UCC- -5'
28091 5' -50.9 NC_005887.1 + 8722 0.66 0.869899
Target:  5'- aAGCGCU--UCGuCGCGGcCACGAAGGa -3'
miRNA:   3'- cUCGUGAcuGGUuGCGUU-GUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 14195 0.66 0.886023
Target:  5'- -cGCGCUGuCgGGCGCGGCcuCGGacAGGg -3'
miRNA:   3'- cuCGUGACuGgUUGCGUUGu-GCU--UCC- -5'
28091 5' -50.9 NC_005887.1 + 3046 0.68 0.753077
Target:  5'- cGGCcaaUGACgAACGaCGACGCGAAGa -3'
miRNA:   3'- cUCGug-ACUGgUUGC-GUUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 12868 0.68 0.774496
Target:  5'- aGGCAC-GACCGugGCAggugccguGCGCGAGc- -3'
miRNA:   3'- cUCGUGaCUGGUugCGU--------UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 4342 0.68 0.784969
Target:  5'- aGGaACUGAUCGACGCcGGCGCGGAuguGGa -3'
miRNA:   3'- cUCgUGACUGGUUGCG-UUGUGCUU---CC- -5'
28091 5' -50.9 NC_005887.1 + 12490 0.69 0.696244
Target:  5'- -cGCGCUGAUCGAUucaGCGGCgcuggauccgcagACGAAGGc -3'
miRNA:   3'- cuCGUGACUGGUUG---CGUUG-------------UGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 18434 0.69 0.68598
Target:  5'- cGA-CGCUGAUCGGCGCGAUcucgacgcagGCGAAGa -3'
miRNA:   3'- -CUcGUGACUGGUUGCGUUG----------UGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 33378 0.7 0.66302
Target:  5'- -uGCACgcGCCGGCGCGGCAgGAugAGGc -3'
miRNA:   3'- cuCGUGacUGGUUGCGUUGUgCU--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.