miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28092 5' -54.3 NC_005887.1 + 19070 0.66 0.676821
Target:  5'- uCGGCgCggGCUGCGgcaACCGCCa----- -3'
miRNA:   3'- -GCCG-GuaCGACGUg--UGGCGGauaaag -5'
28092 5' -54.3 NC_005887.1 + 32780 0.66 0.676821
Target:  5'- cCGGCuCGUGCgcaggaucggcGCGCGCCGCUUc---- -3'
miRNA:   3'- -GCCG-GUACGa----------CGUGUGGCGGAuaaag -5'
28092 5' -54.3 NC_005887.1 + 18244 0.66 0.665435
Target:  5'- uCGGCCAcGCcGgGCACCGUCa----- -3'
miRNA:   3'- -GCCGGUaCGaCgUGUGGCGGauaaag -5'
28092 5' -54.3 NC_005887.1 + 39650 0.66 0.665435
Target:  5'- gCGGCUcgGCcGCuuGCCGCCcGUacgcUUCa -3'
miRNA:   3'- -GCCGGuaCGaCGugUGGCGGaUA----AAG- -5'
28092 5' -54.3 NC_005887.1 + 23374 0.66 0.665435
Target:  5'- uGcGCCAUGCUGC-CGCgUGCCc--UUCg -3'
miRNA:   3'- gC-CGGUACGACGuGUG-GCGGauaAAG- -5'
28092 5' -54.3 NC_005887.1 + 38366 0.66 0.665435
Target:  5'- -aGCCAUcaaGCACGCCGuCCUcgUUCg -3'
miRNA:   3'- gcCGGUAcgaCGUGUGGC-GGAuaAAG- -5'
28092 5' -54.3 NC_005887.1 + 37165 0.66 0.654016
Target:  5'- uGGCUcuUGCUGCACACCucgacgcguGCCa----- -3'
miRNA:   3'- gCCGGu-ACGACGUGUGG---------CGGauaaag -5'
28092 5' -54.3 NC_005887.1 + 20093 0.66 0.654016
Target:  5'- -cGCC-UGCUGCGCGCCaCCg---UCg -3'
miRNA:   3'- gcCGGuACGACGUGUGGcGGauaaAG- -5'
28092 5' -54.3 NC_005887.1 + 40139 0.66 0.642575
Target:  5'- gCGGUgCGcGCUGCGCGCCGCgCUc---- -3'
miRNA:   3'- -GCCG-GUaCGACGUGUGGCG-GAuaaag -5'
28092 5' -54.3 NC_005887.1 + 35158 0.66 0.642575
Target:  5'- gCGGCCGUcacGCUGCACGaucucggccUCGaCCUuUUUCc -3'
miRNA:   3'- -GCCGGUA---CGACGUGU---------GGC-GGAuAAAG- -5'
28092 5' -54.3 NC_005887.1 + 39200 0.66 0.642575
Target:  5'- uCGGCCAacUGCUGCAgCGucaagcccuUCGCCUugcgcagUUCa -3'
miRNA:   3'- -GCCGGU--ACGACGU-GU---------GGCGGAua-----AAG- -5'
28092 5' -54.3 NC_005887.1 + 20475 0.67 0.618528
Target:  5'- gGGCCAcgugcugaugagcUGCUGUGCGCCagucgucaacguGCCUugaauggccGUUUCa -3'
miRNA:   3'- gCCGGU-------------ACGACGUGUGG------------CGGA---------UAAAG- -5'
28092 5' -54.3 NC_005887.1 + 29980 0.67 0.612807
Target:  5'- uGcGCgGUGCUGCucggccugccacguCACCGCCUGg--- -3'
miRNA:   3'- gC-CGgUACGACGu-------------GUGGCGGAUaaag -5'
28092 5' -54.3 NC_005887.1 + 3538 0.67 0.608234
Target:  5'- uGGCUuuGUGCUGCGCGuuGUCg----- -3'
miRNA:   3'- gCCGG--UACGACGUGUggCGGauaaag -5'
28092 5' -54.3 NC_005887.1 + 6955 0.67 0.608234
Target:  5'- aGGCCGUGCgcggGCGCAUCGagcaugagCUGUg-- -3'
miRNA:   3'- gCCGGUACGa---CGUGUGGCg-------GAUAaag -5'
28092 5' -54.3 NC_005887.1 + 15952 0.67 0.608234
Target:  5'- cCGGCCAcGCgccGCAC-CCGCUg---UCg -3'
miRNA:   3'- -GCCGGUaCGa--CGUGuGGCGGauaaAG- -5'
28092 5' -54.3 NC_005887.1 + 30517 0.67 0.605949
Target:  5'- cCGcCCGUGCUGCucgagaacaggcCGCCGCCUGc--- -3'
miRNA:   3'- -GCcGGUACGACGu-----------GUGGCGGAUaaag -5'
28092 5' -54.3 NC_005887.1 + 28734 0.67 0.596818
Target:  5'- gCGGCC--GCcGCGCGCCGCgCUGc--- -3'
miRNA:   3'- -GCCGGuaCGaCGUGUGGCG-GAUaaag -5'
28092 5' -54.3 NC_005887.1 + 34259 0.67 0.596818
Target:  5'- gCGGCgA-GCUGCGCGCgCGCU---UUCg -3'
miRNA:   3'- -GCCGgUaCGACGUGUG-GCGGauaAAG- -5'
28092 5' -54.3 NC_005887.1 + 16136 0.67 0.595678
Target:  5'- uGcGCCA-GCUGCAggccggcCACCGCCgccccguUUUCa -3'
miRNA:   3'- gC-CGGUaCGACGU-------GUGGCGGau-----AAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.