miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28093 3' -54.1 NC_005887.1 + 36967 0.66 0.644216
Target:  5'- aCcgGUCG--CGCUGGCUUCGCcuucgAGCAGu -3'
miRNA:   3'- -GuaCAGCaaGCGACUGAGGCG-----UCGUU- -5'
28093 3' -54.1 NC_005887.1 + 27608 0.66 0.632723
Target:  5'- uCGUGUCGaaggCGCUGAUaCCGUcGCGGu -3'
miRNA:   3'- -GUACAGCaa--GCGACUGaGGCGuCGUU- -5'
28093 3' -54.1 NC_005887.1 + 6806 0.67 0.614339
Target:  5'- aCAUGUCGagcagaccaucggCGCUGACUUCGaAGCGc -3'
miRNA:   3'- -GUACAGCaa-----------GCGACUGAGGCgUCGUu -5'
28093 3' -54.1 NC_005887.1 + 14846 0.67 0.586856
Target:  5'- ----aCGUUCGCgGGCgugcacaCCGCAGCAAc -3'
miRNA:   3'- guacaGCAAGCGaCUGa------GGCGUCGUU- -5'
28093 3' -54.1 NC_005887.1 + 15990 0.68 0.552851
Target:  5'- gAUGUCGUgcgCGCgcaGAC-CCGCcGCGAg -3'
miRNA:   3'- gUACAGCAa--GCGa--CUGaGGCGuCGUU- -5'
28093 3' -54.1 NC_005887.1 + 23937 0.68 0.552851
Target:  5'- --cGUCGU--GCUGACgacggcgCCGCGGCGu -3'
miRNA:   3'- guaCAGCAagCGACUGa------GGCGUCGUu -5'
28093 3' -54.1 NC_005887.1 + 39310 0.68 0.551727
Target:  5'- --cGUCGUUCGUcauuggccgagcaUGGCUuugcCCGCGGCGc -3'
miRNA:   3'- guaCAGCAAGCG-------------ACUGA----GGCGUCGUu -5'
28093 3' -54.1 NC_005887.1 + 30674 0.68 0.530509
Target:  5'- --cGUCGagCGaCUGACcCUGCAGCAGc -3'
miRNA:   3'- guaCAGCaaGC-GACUGaGGCGUCGUU- -5'
28093 3' -54.1 NC_005887.1 + 38444 0.68 0.519461
Target:  5'- cCAUGUCGUUCGCca--UCCGCacauccGGCAu -3'
miRNA:   3'- -GUACAGCAAGCGacugAGGCG------UCGUu -5'
28093 3' -54.1 NC_005887.1 + 19806 0.69 0.465728
Target:  5'- gCAUGUCGaUCGCgGACggcaugCGCAGCGg -3'
miRNA:   3'- -GUACAGCaAGCGaCUGag----GCGUCGUu -5'
28093 3' -54.1 NC_005887.1 + 3312 1.06 0.00121
Target:  5'- cCAUGUCGUUCGCUGACUCCGCAGCAAg -3'
miRNA:   3'- -GUACAGCAAGCGACUGAGGCGUCGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.