miRNA: 3'- -UAGaGCGCG-CGCAGGCAGa---GGCUuac -5'
miRNA: 3'- -UAG-AGCGC-GC-GCAGGCAGa---GGCUuac -5'
miRNA: 3'- uaGAGCGCGCGCaGGC-----AGAGGCUuac -5'
miRNA: 3'- uaGAGCG---CGCGCAGGCag---AGGCUUAc -5'
miRNA: 3'- -UAGAGCGCGCGCAGGCAGAGGCUUAC- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28094 | 3' | -56.8 | NC_005887.1 | + | 33963 | 0.66 | 0.536672 |
|
Target: 5'- cGUCgCGUGCgGCGUCCGUCagcaCCGGc-- -3' miRNA: 3'- -UAGaGCGCG-CGCAGGCAGa---GGCUuac -5' |
|||||||
| 28094 | 3' | -56.8 | NC_005887.1 | + | 7303 | 0.67 | 0.483941 |
|
Target: 5'- gGUCgUCGUGuCGcCGUCCGUCgccgCCGAc-- -3' miRNA: 3'- -UAG-AGCGC-GC-GCAGGCAGa---GGCUuac -5' |
|||||||
| 28094 | 3' | -56.8 | NC_005887.1 | + | 18683 | 0.71 | 0.274249 |
|
Target: 5'- -gUUCGCGCGCG-CCGgauuaUCUCCGAc-- -3' miRNA: 3'- uaGAGCGCGCGCaGGC-----AGAGGCUuac -5' |
|||||||
| 28094 | 3' | -56.8 | NC_005887.1 | + | 30616 | 0.72 | 0.234665 |
|
Target: 5'- -aCUCGCgcaGCGCGUCCGgcagaUCCGGAUc -3' miRNA: 3'- uaGAGCG---CGCGCAGGCag---AGGCUUAc -5' |
|||||||
| 28094 | 3' | -56.8 | NC_005887.1 | + | 3184 | 1.07 | 0.000699 |
|
Target: 5'- gAUCUCGCGCGCGUCCGUCUCCGAAUGg -3' miRNA: 3'- -UAGAGCGCGCGCAGGCAGAGGCUUAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home