Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28095 | 3' | -58.7 | NC_005887.1 | + | 292 | 0.66 | 0.473896 |
Target: 5'- aCUGCGUGgcgugaucagCGaGGCCGCGGUG-CgcgCGu -3' miRNA: 3'- gGACGUACa---------GC-CCGGUGCCGCaGa--GC- -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 2362 | 1.09 | 0.000379 |
Target: 5'- uCCUGCAUGUCGGGCCACGGCGUCUCGc -3' miRNA: 3'- -GGACGUACAGCCCGGUGCCGCAGAGC- -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 6466 | 0.67 | 0.41612 |
Target: 5'- aCCUGaa-GUaCGGG-CGCGGCGUCgCGg -3' miRNA: 3'- -GGACguaCA-GCCCgGUGCCGCAGaGC- -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 13132 | 0.67 | 0.425451 |
Target: 5'- aCCUcgaGCGUGcCGGGCCu---CGUCUCGu -3' miRNA: 3'- -GGA---CGUACaGCCCGGugccGCAGAGC- -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 14189 | 0.66 | 0.483916 |
Target: 5'- aUUGCAcgcgcUGUCGGG-CGCGGC--CUCGg -3' miRNA: 3'- gGACGU-----ACAGCCCgGUGCCGcaGAGC- -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 15402 | 0.69 | 0.309965 |
Target: 5'- gCCUGCAggaucUGUgGGGCCagcagugguucgucgACGGCGgccagcgaCUCGg -3' miRNA: 3'- -GGACGU-----ACAgCCCGG---------------UGCCGCa-------GAGC- -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 25946 | 0.66 | 0.473895 |
Target: 5'- gCC-GCGUGagcuUCcGGCCgGCGGCcGUCUCGa -3' miRNA: 3'- -GGaCGUAC----AGcCCGG-UGCCG-CAGAGC- -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 26146 | 0.7 | 0.299528 |
Target: 5'- aCCUGCGUGUCcGGUCGCaGCGcggcCUCu -3' miRNA: 3'- -GGACGUACAGcCCGGUGcCGCa---GAGc -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 27114 | 0.66 | 0.454174 |
Target: 5'- gCCUGCu--UCGGGCCGCcguuguagucGGCGaUCaUCGc -3' miRNA: 3'- -GGACGuacAGCCCGGUG----------CCGC-AG-AGC- -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 27979 | 0.67 | 0.419838 |
Target: 5'- gCCgccGCcgGcUCGGGCCGaaucgcgucgucggcCGGCGUUUCu -3' miRNA: 3'- -GGa--CGuaC-AGCCCGGU---------------GCCGCAGAGc -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 29720 | 0.66 | 0.494037 |
Target: 5'- aCCUGCGggcaguggcugGUCGGGCUuCuGCGUCa-- -3' miRNA: 3'- -GGACGUa----------CAGCCCGGuGcCGCAGagc -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 29875 | 0.66 | 0.454174 |
Target: 5'- uCCUGCGg--CaGGCCgagcguACGGCGUUUCu -3' miRNA: 3'- -GGACGUacaGcCCGG------UGCCGCAGAGc -5' |
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28095 | 3' | -58.7 | NC_005887.1 | + | 30751 | 0.71 | 0.226896 |
Target: 5'- aCCUGCGUGUCGaGcGCCGaucCGGUGU-UCGg -3' miRNA: 3'- -GGACGUACAGC-C-CGGU---GCCGCAgAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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