Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28095 | 5' | -54.6 | NC_005887.1 | + | 26947 | 0.66 | 0.655105 |
Target: 5'- cGUCGAcGAUCcgcugcccGCGCGCGAUcaGCGCGg -3' miRNA: 3'- -UAGCU-CUAGcuc-----UGUGCGCUA--CGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 28043 | 0.68 | 0.554369 |
Target: 5'- cGUCGGcguGAUCGAG-CAgGCGcUGCGCc -3' miRNA: 3'- -UAGCU---CUAGCUCuGUgCGCuACGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 30442 | 0.68 | 0.558782 |
Target: 5'- cGUCGGGG-CGGGGCAuguUgccgggcuggaacagGCGGUGCGCGa -3' miRNA: 3'- -UAGCUCUaGCUCUGU---G---------------CGCUACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 34688 | 0.7 | 0.442546 |
Target: 5'- uGUCGAGcagcagcgggcggccGUCGucGCGCuuGCGGUGCGCGg -3' miRNA: 3'- -UAGCUC---------------UAGCucUGUG--CGCUACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 35108 | 0.69 | 0.479219 |
Target: 5'- -cCGAGGUCGAuGAuaUugGuCGAUGCGCc -3' miRNA: 3'- uaGCUCUAGCU-CU--GugC-GCUACGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 35116 | 0.66 | 0.655105 |
Target: 5'- uUCGAGggCGGGGCGCG-GAUcggaauccgGCGCc -3' miRNA: 3'- uAGCUCuaGCUCUGUGCgCUA---------CGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 35430 | 0.66 | 0.699742 |
Target: 5'- aGUCGAucaGGUCGAgcGACGCGUaGAUGaCGCc -3' miRNA: 3'- -UAGCU---CUAGCU--CUGUGCG-CUAC-GCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 36221 | 0.66 | 0.666326 |
Target: 5'- cGUCGAGcacgcuuUCGAGGCACcacuucgccaGCucGUGCGCGg -3' miRNA: 3'- -UAGCUCu------AGCUCUGUG----------CGc-UACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 37848 | 0.78 | 0.147583 |
Target: 5'- aGUCGGcGAgc-AGACGCGCGAUGCGCGc -3' miRNA: 3'- -UAGCU-CUagcUCUGUGCGCUACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 38166 | 0.66 | 0.655105 |
Target: 5'- -cCGAGcgCGAaAUAgGCGGUGUGCa -3' miRNA: 3'- uaGCUCuaGCUcUGUgCGCUACGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 40731 | 0.68 | 0.543381 |
Target: 5'- uUCGAGGucgccgcccgcgUCGAGGCgaucgccguugGCGCGccGCGCGc -3' miRNA: 3'- uAGCUCU------------AGCUCUG-----------UGCGCuaCGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 40793 | 0.67 | 0.621352 |
Target: 5'- gGUCGAGGuUCGuGGCG-GCGAcGCGCc -3' miRNA: 3'- -UAGCUCU-AGCuCUGUgCGCUaCGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 42014 | 0.79 | 0.128053 |
Target: 5'- cGUCGAGuGUCGccgcGGCGCGCGAUGCGUa -3' miRNA: 3'- -UAGCUC-UAGCu---CUGUGCGCUACGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 42080 | 0.66 | 0.699742 |
Target: 5'- -aCGAGcgcuGUCGcguGGgGCGCGAUGcCGCGu -3' miRNA: 3'- uaGCUC----UAGCu--CUgUGCGCUAC-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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