miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 39412 0.69 0.264502
Target:  5'- cGCGGCG-GUGCCGCGgCGCuugcgcagcuUGgcGGCGg -3'
miRNA:   3'- -CGUCGCgCGUGGCGU-GCG----------ACauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 9653 0.69 0.244982
Target:  5'- --cGCGCgGCuauCCGUGCGCUGUAcGCGg -3'
miRNA:   3'- cguCGCG-CGu--GGCGUGCGACAUcCGC- -5'
28096 3' -59.7 NC_005887.1 + 39479 0.69 0.271284
Target:  5'- -aAGCGCGUGuuGC-CGCUGgccAGGCu -3'
miRNA:   3'- cgUCGCGCGUggCGuGCGACa--UCCGc -5'
28096 3' -59.7 NC_005887.1 + 26422 0.69 0.271284
Target:  5'- gGCGGcCGCGCGggaaCGCGCGCUGcAGccGCGc -3'
miRNA:   3'- -CGUC-GCGCGUg---GCGUGCGACaUC--CGC- -5'
28096 3' -59.7 NC_005887.1 + 15003 0.69 0.269235
Target:  5'- cGCAG-GCGUGCCGCccgagcugaugcucGCGCUGaagaaugcGGGCGa -3'
miRNA:   3'- -CGUCgCGCGUGGCG--------------UGCGACa-------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 27572 0.69 0.267198
Target:  5'- cGCAGCggaaguacagcgcgaGCGCGCCGUcgaGCGUcgUGUcgaAGGCGc -3'
miRNA:   3'- -CGUCG---------------CGCGUGGCG---UGCG--ACA---UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 2395 0.69 0.257859
Target:  5'- cCGGauccuGCGUGCCGCugGCUucgAGGCGa -3'
miRNA:   3'- cGUCg----CGCGUGGCGugCGAca-UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 17288 0.69 0.257859
Target:  5'- gGCGGCGcCGCGCgCGCaaACGCcgGUucGGCGc -3'
miRNA:   3'- -CGUCGC-GCGUG-GCG--UGCGa-CAu-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 31398 0.69 0.257859
Target:  5'- aGCGGUGCGUGCCGUgguucaGCGggGUAGGg- -3'
miRNA:   3'- -CGUCGCGCGUGGCG------UGCgaCAUCCgc -5'
28096 3' -59.7 NC_005887.1 + 3946 0.69 0.24815
Target:  5'- cGCGGCGCGCAgaagcucgucgacCCGC-CGUUGcucgcgaacgaggAGGCGu -3'
miRNA:   3'- -CGUCGCGCGU-------------GGCGuGCGACa------------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 17042 0.69 0.244982
Target:  5'- uCGGaUGCGCAgCgGCACGCU-UGGGCGg -3'
miRNA:   3'- cGUC-GCGCGU-GgCGUGCGAcAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28137 0.69 0.264502
Target:  5'- aCAGCGCgGCGCCGC-C-CUGUccgAGGCc -3'
miRNA:   3'- cGUCGCG-CGUGGCGuGcGACA---UCCGc -5'
28096 3' -59.7 NC_005887.1 + 30341 0.7 0.220832
Target:  5'- gGCGuGCGUGCGCCGgAUGUcugcaacGUGGGCGc -3'
miRNA:   3'- -CGU-CGCGCGUGGCgUGCGa------CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 16692 0.7 0.21512
Target:  5'- -uGGCGaCGCGCUGCG-GCUGgcGGUGa -3'
miRNA:   3'- cgUCGC-GCGUGGCGUgCGACauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 344 0.7 0.241224
Target:  5'- cGCGGCGacacucgacgugggcCGCagGCCGUGCuGCUGaUAGGCGa -3'
miRNA:   3'- -CGUCGC---------------GCG--UGGCGUG-CGAC-AUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 16513 0.7 0.209536
Target:  5'- cGCAGgccgauCGCGuCGCCGCcgGCGCcgaGUGGGCGc -3'
miRNA:   3'- -CGUC------GCGC-GUGGCG--UGCGa--CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 17180 0.7 0.222571
Target:  5'- -gAGCGCGCgaacgcgGCCGCACGCggcaaUGUugcgccgcgcaagcaGGGCGu -3'
miRNA:   3'- cgUCGCGCG-------UGGCGUGCG-----ACA---------------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28538 0.7 0.226673
Target:  5'- cGCucaCGCGCGCCGgGCuGCugaauuUGUAGGCGu -3'
miRNA:   3'- -CGuc-GCGCGUGGCgUG-CG------ACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 22656 0.7 0.238746
Target:  5'- cGUGGCGCGCAUugauauUGCAUcgGCcgGUGGGCGc -3'
miRNA:   3'- -CGUCGCGCGUG------GCGUG--CGa-CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 27240 0.7 0.238746
Target:  5'- cGCGGCGCaacuGCAUCGCGCGCc---GGCc -3'
miRNA:   3'- -CGUCGCG----CGUGGCGUGCGacauCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.