Results 81 - 100 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 16513 | 0.7 | 0.209536 |
Target: 5'- cGCAGgccgauCGCGuCGCCGCcgGCGCcgaGUGGGCGc -3' miRNA: 3'- -CGUC------GCGC-GUGGCG--UGCGa--CAUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 27467 | 0.7 | 0.207885 |
Target: 5'- aGCAGCuggcgcauucugccGCGCGgUGCGCGCUGUugcuGCGg -3' miRNA: 3'- -CGUCG--------------CGCGUgGCGUGCGACAuc--CGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 2528 | 0.71 | 0.178601 |
Target: 5'- uGCcGCaCGCugCGCaagGCGCUGUcGGGCGg -3' miRNA: 3'- -CGuCGcGCGugGCG---UGCGACA-UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 1598 | 0.71 | 0.198741 |
Target: 5'- cGCGGCGCGCcaacggcgAUCGCcucgACGCgGgcGGCGa -3' miRNA: 3'- -CGUCGCGCG--------UGGCG----UGCGaCauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 27368 | 0.71 | 0.193528 |
Target: 5'- uGCGGCcUGCGCgGCcuGCGCggcGUAGGCGu -3' miRNA: 3'- -CGUCGcGCGUGgCG--UGCGa--CAUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 32502 | 0.71 | 0.18346 |
Target: 5'- uGCGGCGCGCGgCGUucagguuggccGCGCUGaccGGCu -3' miRNA: 3'- -CGUCGCGCGUgGCG-----------UGCGACau-CCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 37055 | 0.71 | 0.188435 |
Target: 5'- -uGGCGUagaacuuCGCCGCGCGCUGcucGGGCGa -3' miRNA: 3'- cgUCGCGc------GUGGCGUGCGACa--UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 8193 | 0.71 | 0.203538 |
Target: 5'- gGCAGUucgaugucuacccGCGCACCGaCACGCgc-GGGCu -3' miRNA: 3'- -CGUCG-------------CGCGUGGC-GUGCGacaUCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 40806 | 0.71 | 0.198741 |
Target: 5'- gGCGGCGaCGCGCCGCuCGacgaUGacgAGGUGa -3' miRNA: 3'- -CGUCGC-GCGUGGCGuGCg---ACa--UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 28234 | 0.71 | 0.193528 |
Target: 5'- aGCAGCGCGCGCaGCuuCGCgagcGGCGc -3' miRNA: 3'- -CGUCGCGCGUGgCGu-GCGacauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11800 | 0.71 | 0.193528 |
Target: 5'- gGCGGCGuCGguUCGUACGCUaagGcAGGCGg -3' miRNA: 3'- -CGUCGC-GCguGGCGUGCGA---CaUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11112 | 0.71 | 0.188435 |
Target: 5'- uGguGCGCGCGaaGCugGCcg-AGGCGc -3' miRNA: 3'- -CguCGCGCGUggCGugCGacaUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 37856 | 0.71 | 0.198741 |
Target: 5'- aGCAGaCGCGCGaugCGCGCGCcGUucGGCa -3' miRNA: 3'- -CGUC-GCGCGUg--GCGUGCGaCAu-CCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 33642 | 0.72 | 0.164705 |
Target: 5'- cGUAGCGCGCGCUGCGCucgGCgaggGUuucauugaucucGGGCa -3' miRNA: 3'- -CGUCGCGCGUGGCGUG---CGa---CA------------UCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 15844 | 0.72 | 0.173389 |
Target: 5'- cGCGGCGCgaucgagggaaacGC-CCGCGCGCaGcAGGCGc -3' miRNA: 3'- -CGUCGCG-------------CGuGGCGUGCGaCaUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11558 | 0.72 | 0.160294 |
Target: 5'- cGCAGCGCGCGgCGguCGCggaaucGGGCu -3' miRNA: 3'- -CGUCGCGCGUgGCguGCGaca---UCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11400 | 0.72 | 0.167858 |
Target: 5'- cGUAcGCGgGCGCCgacaucaccgccgaGCGCGCUGUgcacaAGGCGa -3' miRNA: 3'- -CGU-CGCgCGUGG--------------CGUGCGACA-----UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 4497 | 0.72 | 0.169226 |
Target: 5'- gGC-GCGCGCAUCGCGCGuCUGcucgccgacUAcGGCGg -3' miRNA: 3'- -CGuCGCGCGUGGCGUGC-GAC---------AU-CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 7265 | 0.73 | 0.135624 |
Target: 5'- gGCAGCGacCGCgacaucggccccgGCCGCcCGCUGUGGGUc -3' miRNA: 3'- -CGUCGC--GCG-------------UGGCGuGCGACAUCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 40016 | 0.73 | 0.132294 |
Target: 5'- cGCGGUGCGCAUCaugGCGCGgCUcgAGGCGg -3' miRNA: 3'- -CGUCGCGCGUGG---CGUGC-GAcaUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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