Results 61 - 80 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 27420 | 0.68 | 0.307294 |
Target: 5'- gGCAGCGCGCGgCGUGCGUcGaucGCGa -3' miRNA: 3'- -CGUCGCGCGUgGCGUGCGaCaucCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 41485 | 0.68 | 0.322688 |
Target: 5'- gGCGGCGCGgGCCaCGCGUccacGGGCa -3' miRNA: 3'- -CGUCGCGCgUGGcGUGCGaca-UCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 14704 | 0.68 | 0.319564 |
Target: 5'- cGCGGCGgGCggGCCGgGCGCggcgaucgcgcAGGCGa -3' miRNA: 3'- -CGUCGCgCG--UGGCgUGCGaca--------UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 37682 | 0.68 | 0.325836 |
Target: 5'- aGCAGC-CGCcCCGCAUGCaagcgacgccggGGGCGa -3' miRNA: 3'- -CGUCGcGCGuGGCGUGCGaca---------UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 21279 | 0.68 | 0.306539 |
Target: 5'- gGCGGCGUauGCGCUGCugGC-GUcgcccacauucacGGGCa -3' miRNA: 3'- -CGUCGCG--CGUGGCGugCGaCA-------------UCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11319 | 0.68 | 0.299809 |
Target: 5'- gGCAGCGaGCGCCGCAacCGCgac-GGCc -3' miRNA: 3'- -CGUCGCgCGUGGCGU--GCGacauCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 40760 | 0.68 | 0.292467 |
Target: 5'- cGCcGUugGCGCGCCGCGCGCcGccgagccGGCGg -3' miRNA: 3'- -CGuCG--CGCGUGGCGUGCGaCau-----CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 32307 | 0.68 | 0.292467 |
Target: 5'- cCAGCcgGCGCGCCGCAgUGC-GUAGGa- -3' miRNA: 3'- cGUCG--CGCGUGGCGU-GCGaCAUCCgc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 23245 | 0.68 | 0.292467 |
Target: 5'- aGCGGCgGCGguCgGCGCGCaaaAGGCGc -3' miRNA: 3'- -CGUCG-CGCguGgCGUGCGacaUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 8095 | 0.68 | 0.285265 |
Target: 5'- aGCGcGCGCGCAgcUCGcCGCGCUcgccgAGGCGc -3' miRNA: 3'- -CGU-CGCGCGU--GGC-GUGCGAca---UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 418 | 0.68 | 0.285265 |
Target: 5'- --cGCGcCGCGCCGCcCGCUGUugcuGCGc -3' miRNA: 3'- cguCGC-GCGUGGCGuGCGACAuc--CGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 34696 | 0.68 | 0.307294 |
Target: 5'- aGCAGCGgGCgGCCGUcgucGCGCUugcgGUGcgcGGCGa -3' miRNA: 3'- -CGUCGCgCG-UGGCG----UGCGA----CAU---CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 34274 | 0.67 | 0.37227 |
Target: 5'- cGCGGCuuGCGCaugccgucGCCGUGCGgCUGacugcGGGCGg -3' miRNA: 3'- -CGUCG--CGCG--------UGGCGUGC-GACa----UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 30917 | 0.67 | 0.330599 |
Target: 5'- cCAGCGCgGCAUCGCcuugugccagcGCGCUcGgcGGUGa -3' miRNA: 3'- cGUCGCG-CGUGGCG-----------UGCGA-CauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 37462 | 0.67 | 0.346846 |
Target: 5'- cGCGGUuugcaGUGCGCCGgAUGCgaucagGgcGGCGg -3' miRNA: 3'- -CGUCG-----CGCGUGGCgUGCGa-----CauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 40080 | 0.67 | 0.346846 |
Target: 5'- gGCGGgGCgGgGCUGCACaucuacguGCUGUGGGaCGa -3' miRNA: 3'- -CGUCgCG-CgUGGCGUG--------CGACAUCC-GC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 41023 | 0.67 | 0.355181 |
Target: 5'- -aGGCGUcuacugGCGCCGCGCGgUGcAGGuCGa -3' miRNA: 3'- cgUCGCG------CGUGGCGUGCgACaUCC-GC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 7212 | 0.67 | 0.363656 |
Target: 5'- --cGCGUGCGCag-GCGCUGUcGGCGu -3' miRNA: 3'- cguCGCGCGUGgcgUGCGACAuCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 16119 | 0.67 | 0.363656 |
Target: 5'- gGUGGCGCuGCGCCGCGCGCa------- -3' miRNA: 3'- -CGUCGCG-CGUGGCGUGCGacauccgc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 14218 | 0.67 | 0.37227 |
Target: 5'- aCAGgGCgGCGCCGC--GCUGUucGGCGc -3' miRNA: 3'- cGUCgCG-CGUGGCGugCGACAu-CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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