miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 32307 0.68 0.292467
Target:  5'- cCAGCcgGCGCGCCGCAgUGC-GUAGGa- -3'
miRNA:   3'- cGUCG--CGCGUGGCGU-GCGaCAUCCgc -5'
28096 3' -59.7 NC_005887.1 + 23245 0.68 0.292467
Target:  5'- aGCGGCgGCGguCgGCGCGCaaaAGGCGc -3'
miRNA:   3'- -CGUCG-CGCguGgCGUGCGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 40760 0.68 0.292467
Target:  5'- cGCcGUugGCGCGCCGCGCGCcGccgagccGGCGg -3'
miRNA:   3'- -CGuCG--CGCGUGGCGUGCGaCau-----CCGC- -5'
28096 3' -59.7 NC_005887.1 + 1553 0.68 0.295387
Target:  5'- aGCGGCGCGuCGCCGCcACgaaccucgaccgccgGCUcGgcGGCGn -3'
miRNA:   3'- -CGUCGCGC-GUGGCG-UG---------------CGA-CauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 11319 0.68 0.299809
Target:  5'- gGCAGCGaGCGCCGCAacCGCgac-GGCc -3'
miRNA:   3'- -CGUCGCgCGUGGCGU--GCGacauCCGc -5'
28096 3' -59.7 NC_005887.1 + 36920 0.68 0.299809
Target:  5'- aGCgGGCGCGUggucgcGCCGguCGCUGc-GGCGc -3'
miRNA:   3'- -CG-UCGCGCG------UGGCguGCGACauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 21279 0.68 0.306539
Target:  5'- gGCGGCGUauGCGCUGCugGC-GUcgcccacauucacGGGCa -3'
miRNA:   3'- -CGUCGCG--CGUGGCGugCGaCA-------------UCCGc -5'
28096 3' -59.7 NC_005887.1 + 27420 0.68 0.307294
Target:  5'- gGCAGCGCGCGgCGUGCGUcGaucGCGa -3'
miRNA:   3'- -CGUCGCGCGUgGCGUGCGaCaucCGC- -5'
28096 3' -59.7 NC_005887.1 + 34696 0.68 0.307294
Target:  5'- aGCAGCGgGCgGCCGUcgucGCGCUugcgGUGcgcGGCGa -3'
miRNA:   3'- -CGUCGCgCG-UGGCG----UGCGA----CAU---CCGC- -5'
28096 3' -59.7 NC_005887.1 + 14704 0.68 0.319564
Target:  5'- cGCGGCGgGCggGCCGgGCGCggcgaucgcgcAGGCGa -3'
miRNA:   3'- -CGUCGCgCG--UGGCgUGCGaca--------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 41485 0.68 0.322688
Target:  5'- gGCGGCGCGgGCCaCGCGUccacGGGCa -3'
miRNA:   3'- -CGUCGCGCgUGGcGUGCGaca-UCCGc -5'
28096 3' -59.7 NC_005887.1 + 37682 0.68 0.325836
Target:  5'- aGCAGC-CGCcCCGCAUGCaagcgacgccggGGGCGa -3'
miRNA:   3'- -CGUCGcGCGuGGCGUGCGaca---------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 30917 0.67 0.330599
Target:  5'- cCAGCGCgGCAUCGCcuugugccagcGCGCUcGgcGGUGa -3'
miRNA:   3'- cGUCGCG-CGUGGCG-----------UGCGA-CauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 14125 0.67 0.336221
Target:  5'- aGCuGCGCGCGCUGCucaaaaccgccgagACGCgc--GGCGc -3'
miRNA:   3'- -CGuCGCGCGUGGCG--------------UGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 41710 0.67 0.338652
Target:  5'- cGCGuGCGCuCGCCGCGCGCUuucaucgcGGCu -3'
miRNA:   3'- -CGU-CGCGcGUGGCGUGCGAcau-----CCGc -5'
28096 3' -59.7 NC_005887.1 + 27034 0.67 0.338652
Target:  5'- gGCgAGCGCGCGaccgCGCACGCUGcc-GCc -3'
miRNA:   3'- -CG-UCGCGCGUg---GCGUGCGACaucCGc -5'
28096 3' -59.7 NC_005887.1 + 11376 0.67 0.346846
Target:  5'- cGCGGgcgucaGCGCAgCCGgaGCGCUGgcGGCc -3'
miRNA:   3'- -CGUCg-----CGCGU-GGCg-UGCGACauCCGc -5'
28096 3' -59.7 NC_005887.1 + 37462 0.67 0.346846
Target:  5'- cGCGGUuugcaGUGCGCCGgAUGCgaucagGgcGGCGg -3'
miRNA:   3'- -CGUCG-----CGCGUGGCgUGCGa-----CauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 40080 0.67 0.346846
Target:  5'- gGCGGgGCgGgGCUGCACaucuacguGCUGUGGGaCGa -3'
miRNA:   3'- -CGUCgCG-CgUGGCGUG--------CGACAUCC-GC- -5'
28096 3' -59.7 NC_005887.1 + 6292 0.67 0.346846
Target:  5'- aCGGCGUGCGCgaGCGCGUcg-AGGCc -3'
miRNA:   3'- cGUCGCGCGUGg-CGUGCGacaUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.