Results 61 - 80 of 114 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 39479 | 0.69 | 0.271284 |
Target: 5'- -aAGCGCGUGuuGC-CGCUGgccAGGCu -3' miRNA: 3'- cgUCGCGCGUggCGuGCGACa--UCCGc -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 15003 | 0.69 | 0.269235 |
Target: 5'- cGCAG-GCGUGCCGCccgagcugaugcucGCGCUGaagaaugcGGGCGa -3' miRNA: 3'- -CGUCgCGCGUGGCG--------------UGCGACa-------UCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 27572 | 0.69 | 0.267198 |
Target: 5'- cGCAGCggaaguacagcgcgaGCGCGCCGUcgaGCGUcgUGUcgaAGGCGc -3' miRNA: 3'- -CGUCG---------------CGCGUGGCG---UGCG--ACA---UCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 28137 | 0.69 | 0.264502 |
Target: 5'- aCAGCGCgGCGCCGC-C-CUGUccgAGGCc -3' miRNA: 3'- cGUCGCG-CGUGGCGuGcGACA---UCCGc -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 39412 | 0.69 | 0.264502 |
Target: 5'- cGCGGCG-GUGCCGCGgCGCuugcgcagcuUGgcGGCGg -3' miRNA: 3'- -CGUCGCgCGUGGCGU-GCG----------ACauCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 41353 | 0.69 | 0.257859 |
Target: 5'- aGC-GCGCGCACgGCggccggcaauuuGCGCgUGUcGGCGa -3' miRNA: 3'- -CGuCGCGCGUGgCG------------UGCG-ACAuCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 31398 | 0.69 | 0.257859 |
Target: 5'- aGCGGUGCGUGCCGUgguucaGCGggGUAGGg- -3' miRNA: 3'- -CGUCGCGCGUGGCG------UGCgaCAUCCgc -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 17288 | 0.69 | 0.257859 |
Target: 5'- gGCGGCGcCGCGCgCGCaaACGCcgGUucGGCGc -3' miRNA: 3'- -CGUCGC-GCGUG-GCG--UGCGa-CAu-CCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 2395 | 0.69 | 0.257859 |
Target: 5'- cCGGauccuGCGUGCCGCugGCUucgAGGCGa -3' miRNA: 3'- cGUCg----CGCGUGGCGugCGAca-UCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 3946 | 0.69 | 0.24815 |
Target: 5'- cGCGGCGCGCAgaagcucgucgacCCGC-CGUUGcucgcgaacgaggAGGCGu -3' miRNA: 3'- -CGUCGCGCGU-------------GGCGuGCGACa------------UCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 17042 | 0.69 | 0.244982 |
Target: 5'- uCGGaUGCGCAgCgGCACGCU-UGGGCGg -3' miRNA: 3'- cGUC-GCGCGU-GgCGUGCGAcAUCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 9653 | 0.69 | 0.244982 |
Target: 5'- --cGCGCgGCuauCCGUGCGCUGUAcGCGg -3' miRNA: 3'- cguCGCG-CGu--GGCGUGCGACAUcCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 344 | 0.7 | 0.241224 |
Target: 5'- cGCGGCGacacucgacgugggcCGCagGCCGUGCuGCUGaUAGGCGa -3' miRNA: 3'- -CGUCGC---------------GCG--UGGCGUG-CGAC-AUCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 22656 | 0.7 | 0.238746 |
Target: 5'- cGUGGCGCGCAUugauauUGCAUcgGCcgGUGGGCGc -3' miRNA: 3'- -CGUCGCGCGUG------GCGUG--CGa-CAUCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 27240 | 0.7 | 0.238746 |
Target: 5'- cGCGGCGCaacuGCAUCGCGCGCc---GGCc -3' miRNA: 3'- -CGUCGCG----CGUGGCGUGCGacauCCGc -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 28538 | 0.7 | 0.226673 |
Target: 5'- cGCucaCGCGCGCCGgGCuGCugaauuUGUAGGCGu -3' miRNA: 3'- -CGuc-GCGCGUGGCgUG-CG------ACAUCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 17180 | 0.7 | 0.222571 |
Target: 5'- -gAGCGCGCgaacgcgGCCGCACGCggcaaUGUugcgccgcgcaagcaGGGCGu -3' miRNA: 3'- cgUCGCGCG-------UGGCGUGCG-----ACA---------------UCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 30341 | 0.7 | 0.220832 |
Target: 5'- gGCGuGCGUGCGCCGgAUGUcugcaacGUGGGCGc -3' miRNA: 3'- -CGU-CGCGCGUGGCgUGCGa------CAUCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 16692 | 0.7 | 0.21512 |
Target: 5'- -uGGCGaCGCGCUGCG-GCUGgcGGUGa -3' miRNA: 3'- cgUCGC-GCGUGGCGUgCGACauCCGC- -5' |
|||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 16513 | 0.7 | 0.209536 |
Target: 5'- cGCAGgccgauCGCGuCGCCGCcgGCGCcgaGUGGGCGc -3' miRNA: 3'- -CGUC------GCGC-GUGGCG--UGCGa--CAUCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home