Results 61 - 80 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 26422 | 0.69 | 0.271284 |
Target: 5'- gGCGGcCGCGCGggaaCGCGCGCUGcAGccGCGc -3' miRNA: 3'- -CGUC-GCGCGUg---GCGUGCGACaUC--CGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 26485 | 0.68 | 0.285265 |
Target: 5'- uGCuGGUGCGCcuGCUGCGCGC---GGGCGu -3' miRNA: 3'- -CG-UCGCGCG--UGGCGUGCGacaUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 26746 | 0.66 | 0.395309 |
Target: 5'- uGCuGCGCGaCGcCCGUGCGCUGcgucucagcuucGGCGa -3' miRNA: 3'- -CGuCGCGC-GU-GGCGUGCGACau----------CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 27034 | 0.67 | 0.338652 |
Target: 5'- gGCgAGCGCGCGaccgCGCACGCUGcc-GCc -3' miRNA: 3'- -CG-UCGCGCGUg---GCGUGCGACaucCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 27240 | 0.7 | 0.238746 |
Target: 5'- cGCGGCGCaacuGCAUCGCGCGCc---GGCc -3' miRNA: 3'- -CGUCGCG----CGUGGCGUGCGacauCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 27368 | 0.71 | 0.193528 |
Target: 5'- uGCGGCcUGCGCgGCcuGCGCggcGUAGGCGu -3' miRNA: 3'- -CGUCGcGCGUGgCG--UGCGa--CAUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 27420 | 0.68 | 0.307294 |
Target: 5'- gGCAGCGCGCGgCGUGCGUcGaucGCGa -3' miRNA: 3'- -CGUCGCGCGUgGCGUGCGaCaucCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 27467 | 0.7 | 0.207885 |
Target: 5'- aGCAGCuggcgcauucugccGCGCGgUGCGCGCUGUugcuGCGg -3' miRNA: 3'- -CGUCG--------------CGCGUgGCGUGCGACAuc--CGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 27572 | 0.69 | 0.267198 |
Target: 5'- cGCAGCggaaguacagcgcgaGCGCGCCGUcgaGCGUcgUGUcgaAGGCGc -3' miRNA: 3'- -CGUCG---------------CGCGUGGCG---UGCG--ACA---UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 27655 | 0.66 | 0.389911 |
Target: 5'- --uGCGCGCugagcuGCCGCGCGCgc--GGCu -3' miRNA: 3'- cguCGCGCG------UGGCGUGCGacauCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 28057 | 0.66 | 0.406248 |
Target: 5'- aGCAG-GCGCugCGCcacccauguucggucACGCUGcaugccguuuaccgGGGCGu -3' miRNA: 3'- -CGUCgCGCGugGCG---------------UGCGACa-------------UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 28137 | 0.69 | 0.264502 |
Target: 5'- aCAGCGCgGCGCCGC-C-CUGUccgAGGCc -3' miRNA: 3'- cGUCGCG-CGUGGCGuGcGACA---UCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 28234 | 0.71 | 0.193528 |
Target: 5'- aGCAGCGCGCGCaGCuuCGCgagcGGCGc -3' miRNA: 3'- -CGUCGCGCGUGgCGu-GCGacauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 28333 | 0.68 | 0.285265 |
Target: 5'- gGCGGCGCGC-CgGCG-GUUGcggAGGCGc -3' miRNA: 3'- -CGUCGCGCGuGgCGUgCGACa--UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 28538 | 0.7 | 0.226673 |
Target: 5'- cGCucaCGCGCGCCGgGCuGCugaauuUGUAGGCGu -3' miRNA: 3'- -CGuc-GCGCGUGGCgUG-CG------ACAUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 28734 | 0.75 | 0.091938 |
Target: 5'- cGC-GCGCGCuAUCGC-CGUUGUAGGUGa -3' miRNA: 3'- -CGuCGCGCG-UGGCGuGCGACAUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 28804 | 0.66 | 0.417375 |
Target: 5'- gGCGGCaGCGCAUCGCcgaucgcauuCGCgaucGUGGcGCGc -3' miRNA: 3'- -CGUCG-CGCGUGGCGu---------GCGa---CAUC-CGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 30341 | 0.7 | 0.220832 |
Target: 5'- gGCGuGCGUGCGCCGgAUGUcugcaacGUGGGCGc -3' miRNA: 3'- -CGU-CGCGCGUGGCgUGCGa------CAUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 30487 | 0.76 | 0.083723 |
Target: 5'- cGCGGCccgugcguuGCGCACCGCAaaacugcaucagccCGC-GUAGGCGg -3' miRNA: 3'- -CGUCG---------CGCGUGGCGU--------------GCGaCAUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 30624 | 0.74 | 0.125162 |
Target: 5'- uGCAuucGUGCGCGCCGUGCGCgc--GGCGa -3' miRNA: 3'- -CGU---CGCGCGUGGCGUGCGacauCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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