miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 36920 0.68 0.299809
Target:  5'- aGCgGGCGCGUggucgcGCCGguCGCUGc-GGCGc -3'
miRNA:   3'- -CG-UCGCGCG------UGGCguGCGACauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 35297 0.65 0.425842
Target:  5'- aGCAGCGCuucggccuucucuGCaucgcuccacuGCCGCGCGCcgc-GGCGg -3'
miRNA:   3'- -CGUCGCG-------------CG-----------UGGCGUGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 34696 0.68 0.307294
Target:  5'- aGCAGCGgGCgGCCGUcgucGCGCUugcgGUGcgcGGCGa -3'
miRNA:   3'- -CGUCGCgCG-UGGCG----UGCGA----CAU---CCGC- -5'
28096 3' -59.7 NC_005887.1 + 34274 0.67 0.37227
Target:  5'- cGCGGCuuGCGCaugccgucGCCGUGCGgCUGacugcGGGCGg -3'
miRNA:   3'- -CGUCG--CGCG--------UGGCGUGC-GACa----UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 33642 0.72 0.164705
Target:  5'- cGUAGCGCGCGCUGCGCucgGCgaggGUuucauugaucucGGGCa -3'
miRNA:   3'- -CGUCGCGCGUGGCGUG---CGa---CA------------UCCGc -5'
28096 3' -59.7 NC_005887.1 + 33471 0.66 0.381022
Target:  5'- cGCgAGCGCGUACgGCGuCGCgaucucgacGGGCGc -3'
miRNA:   3'- -CG-UCGCGCGUGgCGU-GCGaca------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 32797 0.66 0.417375
Target:  5'- uCGGCGCGCGCCGCuucac--GGGCa -3'
miRNA:   3'- cGUCGCGCGUGGCGugcgacaUCCGc -5'
28096 3' -59.7 NC_005887.1 + 32743 0.66 0.398934
Target:  5'- cGCGGCGCuCGCgUGCGCGCcGgcGcGCGc -3'
miRNA:   3'- -CGUCGCGcGUG-GCGUGCGaCauC-CGC- -5'
28096 3' -59.7 NC_005887.1 + 32502 0.71 0.18346
Target:  5'- uGCGGCGCGCGgCGUucagguuggccGCGCUGaccGGCu -3'
miRNA:   3'- -CGUCGCGCGUgGCG-----------UGCGACau-CCGc -5'
28096 3' -59.7 NC_005887.1 + 32333 0.73 0.128682
Target:  5'- cCAGCGCG-GCCGCGCGUgaUGUGgucGGCGa -3'
miRNA:   3'- cGUCGCGCgUGGCGUGCG--ACAU---CCGC- -5'
28096 3' -59.7 NC_005887.1 + 32307 0.68 0.292467
Target:  5'- cCAGCcgGCGCGCCGCAgUGC-GUAGGa- -3'
miRNA:   3'- cGUCG--CGCGUGGCGU-GCGaCAUCCgc -5'
28096 3' -59.7 NC_005887.1 + 31398 0.69 0.257859
Target:  5'- aGCGGUGCGUGCCGUgguucaGCGggGUAGGg- -3'
miRNA:   3'- -CGUCGCGCGUGGCG------UGCgaCAUCCgc -5'
28096 3' -59.7 NC_005887.1 + 30917 0.67 0.330599
Target:  5'- cCAGCGCgGCAUCGCcuugugccagcGCGCUcGgcGGUGa -3'
miRNA:   3'- cGUCGCG-CGUGGCG-----------UGCGA-CauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 30808 0.66 0.389911
Target:  5'- -uGGCGCGCACCGCG-GCcuc-GGCc -3'
miRNA:   3'- cgUCGCGCGUGGCGUgCGacauCCGc -5'
28096 3' -59.7 NC_005887.1 + 30624 0.74 0.125162
Target:  5'- uGCAuucGUGCGCGCCGUGCGCgc--GGCGa -3'
miRNA:   3'- -CGU---CGCGCGUGGCGUGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 30487 0.76 0.083723
Target:  5'- cGCGGCccgugcguuGCGCACCGCAaaacugcaucagccCGC-GUAGGCGg -3'
miRNA:   3'- -CGUCG---------CGCGUGGCGU--------------GCGaCAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 30341 0.7 0.220832
Target:  5'- gGCGuGCGUGCGCCGgAUGUcugcaacGUGGGCGc -3'
miRNA:   3'- -CGU-CGCGCGUGGCgUGCGa------CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28804 0.66 0.417375
Target:  5'- gGCGGCaGCGCAUCGCcgaucgcauuCGCgaucGUGGcGCGc -3'
miRNA:   3'- -CGUCG-CGCGUGGCGu---------GCGa---CAUC-CGC- -5'
28096 3' -59.7 NC_005887.1 + 28734 0.75 0.091938
Target:  5'- cGC-GCGCGCuAUCGC-CGUUGUAGGUGa -3'
miRNA:   3'- -CGuCGCGCG-UGGCGuGCGACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28538 0.7 0.226673
Target:  5'- cGCucaCGCGCGCCGgGCuGCugaauuUGUAGGCGu -3'
miRNA:   3'- -CGuc-GCGCGUGGCgUG-CG------ACAUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.