miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 28333 0.68 0.285265
Target:  5'- gGCGGCGCGC-CgGCG-GUUGcggAGGCGc -3'
miRNA:   3'- -CGUCGCGCGuGgCGUgCGACa--UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28234 0.71 0.193528
Target:  5'- aGCAGCGCGCGCaGCuuCGCgagcGGCGc -3'
miRNA:   3'- -CGUCGCGCGUGgCGu-GCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28137 0.69 0.264502
Target:  5'- aCAGCGCgGCGCCGC-C-CUGUccgAGGCc -3'
miRNA:   3'- cGUCGCG-CGUGGCGuGcGACA---UCCGc -5'
28096 3' -59.7 NC_005887.1 + 28057 0.66 0.406248
Target:  5'- aGCAG-GCGCugCGCcacccauguucggucACGCUGcaugccguuuaccgGGGCGu -3'
miRNA:   3'- -CGUCgCGCGugGCG---------------UGCGACa-------------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 27655 0.66 0.389911
Target:  5'- --uGCGCGCugagcuGCCGCGCGCgc--GGCu -3'
miRNA:   3'- cguCGCGCG------UGGCGUGCGacauCCGc -5'
28096 3' -59.7 NC_005887.1 + 27572 0.69 0.267198
Target:  5'- cGCAGCggaaguacagcgcgaGCGCGCCGUcgaGCGUcgUGUcgaAGGCGc -3'
miRNA:   3'- -CGUCG---------------CGCGUGGCG---UGCG--ACA---UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 27467 0.7 0.207885
Target:  5'- aGCAGCuggcgcauucugccGCGCGgUGCGCGCUGUugcuGCGg -3'
miRNA:   3'- -CGUCG--------------CGCGUgGCGUGCGACAuc--CGC- -5'
28096 3' -59.7 NC_005887.1 + 27420 0.68 0.307294
Target:  5'- gGCAGCGCGCGgCGUGCGUcGaucGCGa -3'
miRNA:   3'- -CGUCGCGCGUgGCGUGCGaCaucCGC- -5'
28096 3' -59.7 NC_005887.1 + 27368 0.71 0.193528
Target:  5'- uGCGGCcUGCGCgGCcuGCGCggcGUAGGCGu -3'
miRNA:   3'- -CGUCGcGCGUGgCG--UGCGa--CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 27240 0.7 0.238746
Target:  5'- cGCGGCGCaacuGCAUCGCGCGCc---GGCc -3'
miRNA:   3'- -CGUCGCG----CGUGGCGUGCGacauCCGc -5'
28096 3' -59.7 NC_005887.1 + 27034 0.67 0.338652
Target:  5'- gGCgAGCGCGCGaccgCGCACGCUGcc-GCc -3'
miRNA:   3'- -CG-UCGCGCGUg---GCGUGCGACaucCGc -5'
28096 3' -59.7 NC_005887.1 + 26746 0.66 0.395309
Target:  5'- uGCuGCGCGaCGcCCGUGCGCUGcgucucagcuucGGCGa -3'
miRNA:   3'- -CGuCGCGC-GU-GGCGUGCGACau----------CCGC- -5'
28096 3' -59.7 NC_005887.1 + 26485 0.68 0.285265
Target:  5'- uGCuGGUGCGCcuGCUGCGCGC---GGGCGu -3'
miRNA:   3'- -CG-UCGCGCG--UGGCGUGCGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 26422 0.69 0.271284
Target:  5'- gGCGGcCGCGCGggaaCGCGCGCUGcAGccGCGc -3'
miRNA:   3'- -CGUC-GCGCGUg---GCGUGCGACaUC--CGC- -5'
28096 3' -59.7 NC_005887.1 + 26244 0.66 0.414576
Target:  5'- cGCAGCGC-CACCGgaaaGCGUuucaccaccggccaUGUGcGGCGc -3'
miRNA:   3'- -CGUCGCGcGUGGCg---UGCG--------------ACAU-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 26196 0.67 0.363656
Target:  5'- cGCu-CGCGCACUcgGCGCGCcgGUGguuGGCGg -3'
miRNA:   3'- -CGucGCGCGUGG--CGUGCGa-CAU---CCGC- -5'
28096 3' -59.7 NC_005887.1 + 24604 0.65 0.425842
Target:  5'- cGCGGCGaugaucuUGCgGCCGCACGC-GUGGuCGa -3'
miRNA:   3'- -CGUCGC-------GCG-UGGCGUGCGaCAUCcGC- -5'
28096 3' -59.7 NC_005887.1 + 23725 0.66 0.381022
Target:  5'- aGCAGCGgGcCGCCGauCGCGCUGccGaGCa -3'
miRNA:   3'- -CGUCGCgC-GUGGC--GUGCGACauC-CGc -5'
28096 3' -59.7 NC_005887.1 + 23245 0.68 0.292467
Target:  5'- aGCGGCgGCGguCgGCGCGCaaaAGGCGc -3'
miRNA:   3'- -CGUCG-CGCguGgCGUGCGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 22656 0.7 0.238746
Target:  5'- cGUGGCGCGCAUugauauUGCAUcgGCcgGUGGGCGc -3'
miRNA:   3'- -CGUCGCGCGUG------GCGUG--CGa-CAUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.