miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 21279 0.68 0.306539
Target:  5'- gGCGGCGUauGCGCUGCugGC-GUcgcccacauucacGGGCa -3'
miRNA:   3'- -CGUCGCG--CGUGGCGugCGaCA-------------UCCGc -5'
28096 3' -59.7 NC_005887.1 + 21035 0.67 0.355181
Target:  5'- uGCGGUcgGCGCGgUGgGCGUgcccgugaaUGUGGGCGa -3'
miRNA:   3'- -CGUCG--CGCGUgGCgUGCG---------ACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 18129 0.75 0.101769
Target:  5'- aGCAGCGCaucaaacggcuugGCAacaCGCacgucggcaacacgACGCUGUGGGCGg -3'
miRNA:   3'- -CGUCGCG-------------CGUg--GCG--------------UGCGACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 18022 0.66 0.398934
Target:  5'- cGCcGCGCGCuuaCGCGCGCcggacUGacggccgacgauUGGGCGa -3'
miRNA:   3'- -CGuCGCGCGug-GCGUGCG-----AC------------AUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 17498 0.66 0.411788
Target:  5'- aCGGcCGUGCAUgauggcacggaaaugCGCACGCUcGaGGGCGg -3'
miRNA:   3'- cGUC-GCGCGUG---------------GCGUGCGA-CaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 17415 0.66 0.386339
Target:  5'- --cGCGCGCACCGCGuCGCgaucgacaacGGUGc -3'
miRNA:   3'- cguCGCGCGUGGCGU-GCGacau------CCGC- -5'
28096 3' -59.7 NC_005887.1 + 17288 0.69 0.257859
Target:  5'- gGCGGCGcCGCGCgCGCaaACGCcgGUucGGCGc -3'
miRNA:   3'- -CGUCGC-GCGUG-GCG--UGCGa-CAu-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 17180 0.7 0.222571
Target:  5'- -gAGCGCGCgaacgcgGCCGCACGCggcaaUGUugcgccgcgcaagcaGGGCGu -3'
miRNA:   3'- cgUCGCGCG-------UGGCGUGCG-----ACA---------------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 17042 0.69 0.244982
Target:  5'- uCGGaUGCGCAgCgGCACGCU-UGGGCGg -3'
miRNA:   3'- cGUC-GCGCGU-GgCGUGCGAcAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 16692 0.7 0.21512
Target:  5'- -uGGCGaCGCGCUGCG-GCUGgcGGUGa -3'
miRNA:   3'- cgUCGC-GCGUGGCGUgCGACauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 16513 0.7 0.209536
Target:  5'- cGCAGgccgauCGCGuCGCCGCcgGCGCcgaGUGGGCGc -3'
miRNA:   3'- -CGUC------GCGC-GUGGCG--UGCGa--CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 16452 0.66 0.383675
Target:  5'- cGCGuGCGCGCgggcaugcgcucgACCGCGCggcaggauccggcggGCUGgucGGCGa -3'
miRNA:   3'- -CGU-CGCGCG-------------UGGCGUG---------------CGACau-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 16273 0.67 0.37227
Target:  5'- cGCcGCGCGgGCCGCugacGCGCUGaccAGGa- -3'
miRNA:   3'- -CGuCGCGCgUGGCG----UGCGACa--UCCgc -5'
28096 3' -59.7 NC_005887.1 + 16119 0.67 0.363656
Target:  5'- gGUGGCGCuGCGCCGCGCGCa------- -3'
miRNA:   3'- -CGUCGCG-CGUGGCGUGCGacauccgc -5'
28096 3' -59.7 NC_005887.1 + 15844 0.72 0.173389
Target:  5'- cGCGGCGCgaucgagggaaacGC-CCGCGCGCaGcAGGCGc -3'
miRNA:   3'- -CGUCGCG-------------CGuGGCGUGCGaCaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 15605 0.66 0.417375
Target:  5'- cGCAGCGCacggGCGUCGCGCaGC---AGGCGg -3'
miRNA:   3'- -CGUCGCG----CGUGGCGUG-CGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 15314 0.73 0.135998
Target:  5'- gGCAGCGUGCGCgguCGCGCGCUcgccgAGGUu -3'
miRNA:   3'- -CGUCGCGCGUG---GCGUGCGAca---UCCGc -5'
28096 3' -59.7 NC_005887.1 + 15003 0.69 0.269235
Target:  5'- cGCAG-GCGUGCCGCccgagcugaugcucGCGCUGaagaaugcGGGCGa -3'
miRNA:   3'- -CGUCgCGCGUGGCG--------------UGCGACa-------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 14873 0.75 0.09116
Target:  5'- aCAGCGCGCACCGCGCggcagaaugcgccaGCUGcUAcGGUGc -3'
miRNA:   3'- cGUCGCGCGUGGCGUG--------------CGAC-AU-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 14704 0.68 0.319564
Target:  5'- cGCGGCGgGCggGCCGgGCGCggcgaucgcgcAGGCGa -3'
miRNA:   3'- -CGUCGCgCG--UGGCgUGCGaca--------UCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.