miRNA display CGI


Results 81 - 100 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 14218 0.67 0.37227
Target:  5'- aCAGgGCgGCGCCGC--GCUGUucGGCGc -3'
miRNA:   3'- cGUCgCG-CGUGGCGugCGACAu-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 14125 0.67 0.336221
Target:  5'- aGCuGCGCGCGCUGCucaaaaccgccgagACGCgc--GGCGc -3'
miRNA:   3'- -CGuCGCGCGUGGCG--------------UGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 12682 0.67 0.367085
Target:  5'- aGCaAGCGCcagcugugcuaccucGCGCCGCGCGUgaGUGacgacGGCGa -3'
miRNA:   3'- -CG-UCGCG---------------CGUGGCGUGCGa-CAU-----CCGC- -5'
28096 3' -59.7 NC_005887.1 + 12629 0.66 0.381022
Target:  5'- cGCGGCGCGUgaucCUGCgACGCgac-GGCGa -3'
miRNA:   3'- -CGUCGCGCGu---GGCG-UGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 11800 0.71 0.193528
Target:  5'- gGCGGCGuCGguUCGUACGCUaagGcAGGCGg -3'
miRNA:   3'- -CGUCGC-GCguGGCGUGCGA---CaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 11724 0.66 0.389911
Target:  5'- cGCcGCGCGCACgGCGCGCacgaauGCa -3'
miRNA:   3'- -CGuCGCGCGUGgCGUGCGacauc-CGc -5'
28096 3' -59.7 NC_005887.1 + 11558 0.72 0.160294
Target:  5'- cGCAGCGCGCGgCGguCGCggaaucGGGCu -3'
miRNA:   3'- -CGUCGCGCGUgGCguGCGaca---UCCGc -5'
28096 3' -59.7 NC_005887.1 + 11554 0.69 0.277506
Target:  5'- cGCGGUGCGCGCCauugaucGCGCGCaGaAGGa- -3'
miRNA:   3'- -CGUCGCGCGUGG-------CGUGCGaCaUCCgc -5'
28096 3' -59.7 NC_005887.1 + 11400 0.72 0.167858
Target:  5'- cGUAcGCGgGCGCCgacaucaccgccgaGCGCGCUGUgcacaAGGCGa -3'
miRNA:   3'- -CGU-CGCgCGUGG--------------CGUGCGACA-----UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 11376 0.67 0.346846
Target:  5'- cGCGGgcgucaGCGCAgCCGgaGCGCUGgcGGCc -3'
miRNA:   3'- -CGUCg-----CGCGU-GGCg-UGCGACauCCGc -5'
28096 3' -59.7 NC_005887.1 + 11319 0.68 0.299809
Target:  5'- gGCAGCGaGCGCCGCAacCGCgac-GGCc -3'
miRNA:   3'- -CGUCGCgCGUGGCGU--GCGacauCCGc -5'
28096 3' -59.7 NC_005887.1 + 11112 0.71 0.188435
Target:  5'- uGguGCGCGCGaaGCugGCcg-AGGCGc -3'
miRNA:   3'- -CguCGCGCGUggCGugCGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 9653 0.69 0.244982
Target:  5'- --cGCGCgGCuauCCGUGCGCUGUAcGCGg -3'
miRNA:   3'- cguCGCG-CGu--GGCGUGCGACAUcCGC- -5'
28096 3' -59.7 NC_005887.1 + 9610 0.7 0.209536
Target:  5'- cCGGCGCGCacgcgagcGCCGCGCuaccccGCcGUGGGUGa -3'
miRNA:   3'- cGUCGCGCG--------UGGCGUG------CGaCAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 9564 0.73 0.147692
Target:  5'- aGCGGCGCGCGCCgauccugcGCACgagccgGCUGcauGGCGc -3'
miRNA:   3'- -CGUCGCGCGUGG--------CGUG------CGACau-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 8193 0.71 0.203538
Target:  5'- gGCAGUucgaugucuacccGCGCACCGaCACGCgc-GGGCu -3'
miRNA:   3'- -CGUCG-------------CGCGUGGC-GUGCGacaUCCGc -5'
28096 3' -59.7 NC_005887.1 + 8095 0.68 0.285265
Target:  5'- aGCGcGCGCGCAgcUCGcCGCGCUcgccgAGGCGc -3'
miRNA:   3'- -CGU-CGCGCGU--GGC-GUGCGAca---UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 7936 0.66 0.411788
Target:  5'- -uGGCGuCGCaagucggaaucuguaACCGCGCGCUGacgaagaucGGCGa -3'
miRNA:   3'- cgUCGC-GCG---------------UGGCGUGCGACau-------CCGC- -5'
28096 3' -59.7 NC_005887.1 + 7265 0.73 0.135624
Target:  5'- gGCAGCGacCGCgacaucggccccgGCCGCcCGCUGUGGGUc -3'
miRNA:   3'- -CGUCGC--GCG-------------UGGCGuGCGACAUCCGc -5'
28096 3' -59.7 NC_005887.1 + 7212 0.67 0.363656
Target:  5'- --cGCGUGCGCag-GCGCUGUcGGCGu -3'
miRNA:   3'- cguCGCGCGUGgcgUGCGACAuCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.