Results 101 - 114 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 6292 | 0.67 | 0.346846 |
Target: 5'- aCGGCGUGCGCgaGCGCGUcg-AGGCc -3' miRNA: 3'- cGUCGCGCGUGg-CGUGCGacaUCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 4497 | 0.72 | 0.169226 |
Target: 5'- gGC-GCGCGCAUCGCGCGuCUGcucgccgacUAcGGCGg -3' miRNA: 3'- -CGuCGCGCGUGGCGUGC-GAC---------AU-CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 4204 | 0.66 | 0.408089 |
Target: 5'- -aAGUGCuGCAgCGCGCGCaGgagaaAGGCGu -3' miRNA: 3'- cgUCGCG-CGUgGCGUGCGaCa----UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 3946 | 0.69 | 0.24815 |
Target: 5'- cGCGGCGCGCAgaagcucgucgacCCGC-CGUUGcucgcgaacgaggAGGCGu -3' miRNA: 3'- -CGUCGCGCGU-------------GGCGuGCGACa------------UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 3526 | 0.66 | 0.407168 |
Target: 5'- -gAGCGguagucauggcuuUGUGCUGCGCGUUGUcGGCGa -3' miRNA: 3'- cgUCGC-------------GCGUGGCGUGCGACAuCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 3402 | 0.75 | 0.097283 |
Target: 5'- cGCcGCGCGCuACCGCugGCa--GGGCGg -3' miRNA: 3'- -CGuCGCGCG-UGGCGugCGacaUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 2528 | 0.71 | 0.178601 |
Target: 5'- uGCcGCaCGCugCGCaagGCGCUGUcGGGCGg -3' miRNA: 3'- -CGuCGcGCGugGCG---UGCGACA-UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 2395 | 0.69 | 0.257859 |
Target: 5'- cCGGauccuGCGUGCCGCugGCUucgAGGCGa -3' miRNA: 3'- cGUCg----CGCGUGGCGugCGAca-UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 2221 | 1.1 | 0.000212 |
Target: 5'- cGCAGCGCGCACCGCACGCUGUAGGCGu -3' miRNA: 3'- -CGUCGCGCGUGGCGUGCGACAUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 1598 | 0.71 | 0.198741 |
Target: 5'- cGCGGCGCGCcaacggcgAUCGCcucgACGCgGgcGGCGa -3' miRNA: 3'- -CGUCGCGCG--------UGGCG----UGCGaCauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 1553 | 0.68 | 0.295387 |
Target: 5'- aGCGGCGCGuCGCCGCcACgaaccucgaccgccgGCUcGgcGGCGn -3' miRNA: 3'- -CGUCGCGC-GUGGCG-UG---------------CGA-CauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 1070 | 0.77 | 0.075345 |
Target: 5'- aGCAGCGCGC-CCGUGCGCagGUcgacGGCGc -3' miRNA: 3'- -CGUCGCGCGuGGCGUGCGa-CAu---CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 418 | 0.68 | 0.285265 |
Target: 5'- --cGCGcCGCGCCGCcCGCUGUugcuGCGc -3' miRNA: 3'- cguCGC-GCGUGGCGuGCGACAuc--CGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 344 | 0.7 | 0.241224 |
Target: 5'- cGCGGCGacacucgacgugggcCGCagGCCGUGCuGCUGaUAGGCGa -3' miRNA: 3'- -CGUCGC---------------GCG--UGGCGUG-CGAC-AUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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