miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 3946 0.69 0.24815
Target:  5'- cGCGGCGCGCAgaagcucgucgacCCGC-CGUUGcucgcgaacgaggAGGCGu -3'
miRNA:   3'- -CGUCGCGCGU-------------GGCGuGCGACa------------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 16513 0.7 0.209536
Target:  5'- cGCAGgccgauCGCGuCGCCGCcgGCGCcgaGUGGGCGc -3'
miRNA:   3'- -CGUC------GCGC-GUGGCG--UGCGa--CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 17180 0.7 0.222571
Target:  5'- -gAGCGCGCgaacgcgGCCGCACGCggcaaUGUugcgccgcgcaagcaGGGCGu -3'
miRNA:   3'- cgUCGCGCG-------UGGCGUGCG-----ACA---------------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28538 0.7 0.226673
Target:  5'- cGCucaCGCGCGCCGgGCuGCugaauuUGUAGGCGu -3'
miRNA:   3'- -CGuc-GCGCGUGGCgUG-CG------ACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 22656 0.7 0.238746
Target:  5'- cGUGGCGCGCAUugauauUGCAUcgGCcgGUGGGCGc -3'
miRNA:   3'- -CGUCGCGCGUG------GCGUG--CGa-CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 27240 0.7 0.238746
Target:  5'- cGCGGCGCaacuGCAUCGCGCGCc---GGCc -3'
miRNA:   3'- -CGUCGCG----CGUGGCGUGCGacauCCGc -5'
28096 3' -59.7 NC_005887.1 + 17042 0.69 0.244982
Target:  5'- uCGGaUGCGCAgCgGCACGCU-UGGGCGg -3'
miRNA:   3'- cGUC-GCGCGU-GgCGUGCGAcAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 26196 0.67 0.363656
Target:  5'- cGCu-CGCGCACUcgGCGCGCcgGUGguuGGCGg -3'
miRNA:   3'- -CGucGCGCGUGG--CGUGCGa-CAU---CCGC- -5'
28096 3' -59.7 NC_005887.1 + 12682 0.67 0.367085
Target:  5'- aGCaAGCGCcagcugugcuaccucGCGCCGCGCGUgaGUGacgacGGCGa -3'
miRNA:   3'- -CG-UCGCG---------------CGUGGCGUGCGa-CAU-----CCGC- -5'
28096 3' -59.7 NC_005887.1 + 16273 0.67 0.37227
Target:  5'- cGCcGCGCGgGCCGCugacGCGCUGaccAGGa- -3'
miRNA:   3'- -CGuCGCGCgUGGCG----UGCGACa--UCCgc -5'
28096 3' -59.7 NC_005887.1 + 23725 0.66 0.381022
Target:  5'- aGCAGCGgGcCGCCGauCGCGCUGccGaGCa -3'
miRNA:   3'- -CGUCGCgC-GUGGC--GUGCGACauC-CGc -5'
28096 3' -59.7 NC_005887.1 + 33471 0.66 0.381022
Target:  5'- cGCgAGCGCGUACgGCGuCGCgaucucgacGGGCGc -3'
miRNA:   3'- -CG-UCGCGCGUGgCGU-GCGaca------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 12629 0.66 0.381022
Target:  5'- cGCGGCGCGUgaucCUGCgACGCgac-GGCGa -3'
miRNA:   3'- -CGUCGCGCGu---GGCG-UGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 17415 0.66 0.386339
Target:  5'- --cGCGCGCACCGCGuCGCgaucgacaacGGUGc -3'
miRNA:   3'- cguCGCGCGUGGCGU-GCGacau------CCGC- -5'
28096 3' -59.7 NC_005887.1 + 26746 0.66 0.395309
Target:  5'- uGCuGCGCGaCGcCCGUGCGCUGcgucucagcuucGGCGa -3'
miRNA:   3'- -CGuCGCGC-GU-GGCGUGCGACau----------CCGC- -5'
28096 3' -59.7 NC_005887.1 + 3526 0.66 0.407168
Target:  5'- -gAGCGguagucauggcuuUGUGCUGCGCGUUGUcGGCGa -3'
miRNA:   3'- cgUCGC-------------GCGUGGCGUGCGACAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 42042 0.66 0.408089
Target:  5'- uGUAcGCGCGCACCGCGgccuCGCUGa----- -3'
miRNA:   3'- -CGU-CGCGCGUGGCGU----GCGACauccgc -5'
28096 3' -59.7 NC_005887.1 + 39144 0.66 0.408089
Target:  5'- uGCgAGCGCuCGCgGCccuucuCGCUGUccGGGCGc -3'
miRNA:   3'- -CG-UCGCGcGUGgCGu-----GCGACA--UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 26244 0.66 0.414576
Target:  5'- cGCAGCGC-CACCGgaaaGCGUuucaccaccggccaUGUGcGGCGc -3'
miRNA:   3'- -CGUCGCGcGUGGCg---UGCG--------------ACAU-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 2221 1.1 0.000212
Target:  5'- cGCAGCGCGCACCGCACGCUGUAGGCGu -3'
miRNA:   3'- -CGUCGCGCGUGGCGUGCGACAUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.