Results 81 - 100 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 9610 | 0.7 | 0.209536 |
Target: 5'- cCGGCGCGCacgcgagcGCCGCGCuaccccGCcGUGGGUGa -3' miRNA: 3'- cGUCGCGCG--------UGGCGUG------CGaCAUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 27467 | 0.7 | 0.207885 |
Target: 5'- aGCAGCuggcgcauucugccGCGCGgUGCGCGCUGUugcuGCGg -3' miRNA: 3'- -CGUCG--------------CGCGUgGCGUGCGACAuc--CGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 1598 | 0.71 | 0.198741 |
Target: 5'- cGCGGCGCGCcaacggcgAUCGCcucgACGCgGgcGGCGa -3' miRNA: 3'- -CGUCGCGCG--------UGGCG----UGCGaCauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 41485 | 0.68 | 0.322688 |
Target: 5'- gGCGGCGCGgGCCaCGCGUccacGGGCa -3' miRNA: 3'- -CGUCGCGCgUGGcGUGCGaca-UCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 14125 | 0.67 | 0.336221 |
Target: 5'- aGCuGCGCGCGCUGCucaaaaccgccgagACGCgc--GGCGc -3' miRNA: 3'- -CGuCGCGCGUGGCG--------------UGCGacauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 26244 | 0.66 | 0.414576 |
Target: 5'- cGCAGCGC-CACCGgaaaGCGUuucaccaccggccaUGUGcGGCGc -3' miRNA: 3'- -CGUCGCGcGUGGCg---UGCG--------------ACAU-CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 39144 | 0.66 | 0.408089 |
Target: 5'- uGCgAGCGCuCGCgGCccuucuCGCUGUccGGGCGc -3' miRNA: 3'- -CG-UCGCGcGUGgCGu-----GCGACA--UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 42042 | 0.66 | 0.408089 |
Target: 5'- uGUAcGCGCGCACCGCGgccuCGCUGa----- -3' miRNA: 3'- -CGU-CGCGCGUGGCGU----GCGACauccgc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 3526 | 0.66 | 0.407168 |
Target: 5'- -gAGCGguagucauggcuuUGUGCUGCGCGUUGUcGGCGa -3' miRNA: 3'- cgUCGC-------------GCGUGGCGUGCGACAuCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 26746 | 0.66 | 0.395309 |
Target: 5'- uGCuGCGCGaCGcCCGUGCGCUGcgucucagcuucGGCGa -3' miRNA: 3'- -CGuCGCGC-GU-GGCGUGCGACau----------CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 17415 | 0.66 | 0.386339 |
Target: 5'- --cGCGCGCACCGCGuCGCgaucgacaacGGUGc -3' miRNA: 3'- cguCGCGCGUGGCGU-GCGacau------CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 12629 | 0.66 | 0.381022 |
Target: 5'- cGCGGCGCGUgaucCUGCgACGCgac-GGCGa -3' miRNA: 3'- -CGUCGCGCGu---GGCG-UGCGacauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 33471 | 0.66 | 0.381022 |
Target: 5'- cGCgAGCGCGUACgGCGuCGCgaucucgacGGGCGc -3' miRNA: 3'- -CG-UCGCGCGUGgCGU-GCGaca------UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 23725 | 0.66 | 0.381022 |
Target: 5'- aGCAGCGgGcCGCCGauCGCGCUGccGaGCa -3' miRNA: 3'- -CGUCGCgC-GUGGC--GUGCGACauC-CGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 16273 | 0.67 | 0.37227 |
Target: 5'- cGCcGCGCGgGCCGCugacGCGCUGaccAGGa- -3' miRNA: 3'- -CGuCGCGCgUGGCG----UGCGACa--UCCgc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 12682 | 0.67 | 0.367085 |
Target: 5'- aGCaAGCGCcagcugugcuaccucGCGCCGCGCGUgaGUGacgacGGCGa -3' miRNA: 3'- -CG-UCGCG---------------CGUGGCGUGCGa-CAU-----CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 26196 | 0.67 | 0.363656 |
Target: 5'- cGCu-CGCGCACUcgGCGCGCcgGUGguuGGCGg -3' miRNA: 3'- -CGucGCGCGUGG--CGUGCGa-CAU---CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 21035 | 0.67 | 0.355181 |
Target: 5'- uGCGGUcgGCGCGgUGgGCGUgcccgugaaUGUGGGCGa -3' miRNA: 3'- -CGUCG--CGCGUgGCgUGCG---------ACAUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 6292 | 0.67 | 0.346846 |
Target: 5'- aCGGCGUGCGCgaGCGCGUcg-AGGCc -3' miRNA: 3'- cGUCGCGCGUGg-CGUGCGacaUCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 41710 | 0.67 | 0.338652 |
Target: 5'- cGCGuGCGCuCGCCGCGCGCUuucaucgcGGCu -3' miRNA: 3'- -CGU-CGCGcGUGGCGUGCGAcau-----CCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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