miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 26485 0.68 0.285265
Target:  5'- uGCuGGUGCGCcuGCUGCGCGC---GGGCGu -3'
miRNA:   3'- -CG-UCGCGCG--UGGCGUGCGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 36920 0.68 0.299809
Target:  5'- aGCgGGCGCGUggucgcGCCGguCGCUGc-GGCGc -3'
miRNA:   3'- -CG-UCGCGCG------UGGCguGCGACauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 16273 0.67 0.37227
Target:  5'- cGCcGCGCGgGCCGCugacGCGCUGaccAGGa- -3'
miRNA:   3'- -CGuCGCGCgUGGCG----UGCGACa--UCCgc -5'
28096 3' -59.7 NC_005887.1 + 42042 0.66 0.408089
Target:  5'- uGUAcGCGCGCACCGCGgccuCGCUGa----- -3'
miRNA:   3'- -CGU-CGCGCGUGGCGU----GCGACauccgc -5'
28096 3' -59.7 NC_005887.1 + 37856 0.71 0.198741
Target:  5'- aGCAGaCGCGCGaugCGCGCGCcGUucGGCa -3'
miRNA:   3'- -CGUC-GCGCGUg--GCGUGCGaCAu-CCGc -5'
28096 3' -59.7 NC_005887.1 + 9653 0.69 0.244982
Target:  5'- --cGCGCgGCuauCCGUGCGCUGUAcGCGg -3'
miRNA:   3'- cguCGCG-CGu--GGCGUGCGACAUcCGC- -5'
28096 3' -59.7 NC_005887.1 + 41485 0.68 0.322688
Target:  5'- gGCGGCGCGgGCCaCGCGUccacGGGCa -3'
miRNA:   3'- -CGUCGCGCgUGGcGUGCGaca-UCCGc -5'
28096 3' -59.7 NC_005887.1 + 39144 0.66 0.408089
Target:  5'- uGCgAGCGCuCGCgGCccuucuCGCUGUccGGGCGc -3'
miRNA:   3'- -CG-UCGCGcGUGgCGu-----GCGACA--UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 41353 0.69 0.257859
Target:  5'- aGC-GCGCGCACgGCggccggcaauuuGCGCgUGUcGGCGa -3'
miRNA:   3'- -CGuCGCGCGUGgCG------------UGCG-ACAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 26244 0.66 0.414576
Target:  5'- cGCAGCGC-CACCGgaaaGCGUuucaccaccggccaUGUGcGGCGc -3'
miRNA:   3'- -CGUCGCGcGUGGCg---UGCG--------------ACAU-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 27420 0.68 0.307294
Target:  5'- gGCAGCGCGCGgCGUGCGUcGaucGCGa -3'
miRNA:   3'- -CGUCGCGCGUgGCGUGCGaCaucCGC- -5'
28096 3' -59.7 NC_005887.1 + 11554 0.69 0.277506
Target:  5'- cGCGGUGCGCGCCauugaucGCGCGCaGaAGGa- -3'
miRNA:   3'- -CGUCGCGCGUGG-------CGUGCGaCaUCCgc -5'
28096 3' -59.7 NC_005887.1 + 6292 0.67 0.346846
Target:  5'- aCGGCGUGCGCgaGCGCGUcg-AGGCc -3'
miRNA:   3'- cGUCGCGCGUGg-CGUGCGacaUCCGc -5'
28096 3' -59.7 NC_005887.1 + 12682 0.67 0.367085
Target:  5'- aGCaAGCGCcagcugugcuaccucGCGCCGCGCGUgaGUGacgacGGCGa -3'
miRNA:   3'- -CG-UCGCG---------------CGUGGCGUGCGa-CAU-----CCGC- -5'
28096 3' -59.7 NC_005887.1 + 12629 0.66 0.381022
Target:  5'- cGCGGCGCGUgaucCUGCgACGCgac-GGCGa -3'
miRNA:   3'- -CGUCGCGCGu---GGCG-UGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 3526 0.66 0.407168
Target:  5'- -gAGCGguagucauggcuuUGUGCUGCGCGUUGUcGGCGa -3'
miRNA:   3'- cgUCGC-------------GCGUGGCGUGCGACAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 11400 0.72 0.167858
Target:  5'- cGUAcGCGgGCGCCgacaucaccgccgaGCGCGCUGUgcacaAGGCGa -3'
miRNA:   3'- -CGU-CGCgCGUGG--------------CGUGCGACA-----UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 27368 0.71 0.193528
Target:  5'- uGCGGCcUGCGCgGCcuGCGCggcGUAGGCGu -3'
miRNA:   3'- -CGUCGcGCGUGgCG--UGCGa--CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 9610 0.7 0.209536
Target:  5'- cCGGCGCGCacgcgagcGCCGCGCuaccccGCcGUGGGUGa -3'
miRNA:   3'- cGUCGCGCG--------UGGCGUG------CGaCAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 344 0.7 0.241224
Target:  5'- cGCGGCGacacucgacgugggcCGCagGCCGUGCuGCUGaUAGGCGa -3'
miRNA:   3'- -CGUCGC---------------GCG--UGGCGUG-CGAC-AUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.