miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 30341 0.7 0.220832
Target:  5'- gGCGuGCGUGCGCCGgAUGUcugcaacGUGGGCGc -3'
miRNA:   3'- -CGU-CGCGCGUGGCgUGCGa------CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 41353 0.69 0.257859
Target:  5'- aGC-GCGCGCACgGCggccggcaauuuGCGCgUGUcGGCGa -3'
miRNA:   3'- -CGuCGCGCGUGgCG------------UGCG-ACAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 26485 0.68 0.285265
Target:  5'- uGCuGGUGCGCcuGCUGCGCGC---GGGCGu -3'
miRNA:   3'- -CG-UCGCGCG--UGGCGUGCGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 36920 0.68 0.299809
Target:  5'- aGCgGGCGCGUggucgcGCCGguCGCUGc-GGCGc -3'
miRNA:   3'- -CG-UCGCGCG------UGGCguGCGACauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 6292 0.67 0.346846
Target:  5'- aCGGCGUGCGCgaGCGCGUcg-AGGCc -3'
miRNA:   3'- cGUCGCGCGUGg-CGUGCGacaUCCGc -5'
28096 3' -59.7 NC_005887.1 + 12682 0.67 0.367085
Target:  5'- aGCaAGCGCcagcugugcuaccucGCGCCGCGCGUgaGUGacgacGGCGa -3'
miRNA:   3'- -CG-UCGCG---------------CGUGGCGUGCGa-CAU-----CCGC- -5'
28096 3' -59.7 NC_005887.1 + 12629 0.66 0.381022
Target:  5'- cGCGGCGCGUgaucCUGCgACGCgac-GGCGa -3'
miRNA:   3'- -CGUCGCGCGu---GGCG-UGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 32743 0.66 0.398934
Target:  5'- cGCGGCGCuCGCgUGCGCGCcGgcGcGCGc -3'
miRNA:   3'- -CGUCGCGcGUG-GCGUGCGaCauC-CGC- -5'
28096 3' -59.7 NC_005887.1 + 41640 0.66 0.398934
Target:  5'- uGCuGCgucuGCGCGgCGCACGCUucgucuacGUuGGCGa -3'
miRNA:   3'- -CGuCG----CGCGUgGCGUGCGA--------CAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28057 0.66 0.406248
Target:  5'- aGCAG-GCGCugCGCcacccauguucggucACGCUGcaugccguuuaccgGGGCGu -3'
miRNA:   3'- -CGUCgCGCGugGCG---------------UGCGACa-------------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 18022 0.66 0.398934
Target:  5'- cGCcGCGCGCuuaCGCGCGCcggacUGacggccgacgauUGGGCGa -3'
miRNA:   3'- -CGuCGCGCGug-GCGUGCG-----AC------------AUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 27655 0.66 0.389911
Target:  5'- --uGCGCGCugagcuGCCGCGCGCgc--GGCu -3'
miRNA:   3'- cguCGCGCG------UGGCGUGCGacauCCGc -5'
28096 3' -59.7 NC_005887.1 + 11724 0.66 0.389911
Target:  5'- cGCcGCGCGCACgGCGCGCacgaauGCa -3'
miRNA:   3'- -CGuCGCGCGUGgCGUGCGacauc-CGc -5'
28096 3' -59.7 NC_005887.1 + 11800 0.71 0.193528
Target:  5'- gGCGGCGuCGguUCGUACGCUaagGcAGGCGg -3'
miRNA:   3'- -CGUCGC-GCguGGCGUGCGA---CaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 2395 0.69 0.257859
Target:  5'- cCGGauccuGCGUGCCGCugGCUucgAGGCGa -3'
miRNA:   3'- cGUCg----CGCGUGGCGugCGAca-UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 27572 0.69 0.267198
Target:  5'- cGCAGCggaaguacagcgcgaGCGCGCCGUcgaGCGUcgUGUcgaAGGCGc -3'
miRNA:   3'- -CGUCG---------------CGCGUGGCG---UGCG--ACA---UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 15003 0.69 0.269235
Target:  5'- cGCAG-GCGUGCCGCccgagcugaugcucGCGCUGaagaaugcGGGCGa -3'
miRNA:   3'- -CGUCgCGCGUGGCG--------------UGCGACa-------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 40016 0.73 0.132294
Target:  5'- cGCGGUGCGCAUCaugGCGCGgCUcgAGGCGg -3'
miRNA:   3'- -CGUCGCGCGUGG---CGUGC-GAcaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 39479 0.69 0.271284
Target:  5'- -aAGCGCGUGuuGC-CGCUGgccAGGCu -3'
miRNA:   3'- cgUCGCGCGUggCGuGCGACa--UCCGc -5'
28096 3' -59.7 NC_005887.1 + 11112 0.71 0.188435
Target:  5'- uGguGCGCGCGaaGCugGCcg-AGGCGc -3'
miRNA:   3'- -CguCGCGCGUggCGugCGacaUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.