miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 17415 0.66 0.386339
Target:  5'- --cGCGCGCACCGCGuCGCgaucgacaacGGUGc -3'
miRNA:   3'- cguCGCGCGUGGCGU-GCGacau------CCGC- -5'
28096 3' -59.7 NC_005887.1 + 16452 0.66 0.383675
Target:  5'- cGCGuGCGCGCgggcaugcgcucgACCGCGCggcaggauccggcggGCUGgucGGCGa -3'
miRNA:   3'- -CGU-CGCGCG-------------UGGCGUG---------------CGACau-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 12629 0.66 0.381022
Target:  5'- cGCGGCGCGUgaucCUGCgACGCgac-GGCGa -3'
miRNA:   3'- -CGUCGCGCGu---GGCG-UGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 33471 0.66 0.381022
Target:  5'- cGCgAGCGCGUACgGCGuCGCgaucucgacGGGCGc -3'
miRNA:   3'- -CG-UCGCGCGUGgCGU-GCGaca------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 23725 0.66 0.381022
Target:  5'- aGCAGCGgGcCGCCGauCGCGCUGccGaGCa -3'
miRNA:   3'- -CGUCGCgC-GUGGC--GUGCGACauC-CGc -5'
28096 3' -59.7 NC_005887.1 + 16273 0.67 0.37227
Target:  5'- cGCcGCGCGgGCCGCugacGCGCUGaccAGGa- -3'
miRNA:   3'- -CGuCGCGCgUGGCG----UGCGACa--UCCgc -5'
28096 3' -59.7 NC_005887.1 + 34274 0.67 0.37227
Target:  5'- cGCGGCuuGCGCaugccgucGCCGUGCGgCUGacugcGGGCGg -3'
miRNA:   3'- -CGUCG--CGCG--------UGGCGUGC-GACa----UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 14218 0.67 0.37227
Target:  5'- aCAGgGCgGCGCCGC--GCUGUucGGCGc -3'
miRNA:   3'- cGUCgCG-CGUGGCGugCGACAu-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 12682 0.67 0.367085
Target:  5'- aGCaAGCGCcagcugugcuaccucGCGCCGCGCGUgaGUGacgacGGCGa -3'
miRNA:   3'- -CG-UCGCG---------------CGUGGCGUGCGa-CAU-----CCGC- -5'
28096 3' -59.7 NC_005887.1 + 16119 0.67 0.363656
Target:  5'- gGUGGCGCuGCGCCGCGCGCa------- -3'
miRNA:   3'- -CGUCGCG-CGUGGCGUGCGacauccgc -5'
28096 3' -59.7 NC_005887.1 + 7212 0.67 0.363656
Target:  5'- --cGCGUGCGCag-GCGCUGUcGGCGu -3'
miRNA:   3'- cguCGCGCGUGgcgUGCGACAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 26196 0.67 0.363656
Target:  5'- cGCu-CGCGCACUcgGCGCGCcgGUGguuGGCGg -3'
miRNA:   3'- -CGucGCGCGUGG--CGUGCGa-CAU---CCGC- -5'
28096 3' -59.7 NC_005887.1 + 21035 0.67 0.355181
Target:  5'- uGCGGUcgGCGCGgUGgGCGUgcccgugaaUGUGGGCGa -3'
miRNA:   3'- -CGUCG--CGCGUgGCgUGCG---------ACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 41023 0.67 0.355181
Target:  5'- -aGGCGUcuacugGCGCCGCGCGgUGcAGGuCGa -3'
miRNA:   3'- cgUCGCG------CGUGGCGUGCgACaUCC-GC- -5'
28096 3' -59.7 NC_005887.1 + 40080 0.67 0.346846
Target:  5'- gGCGGgGCgGgGCUGCACaucuacguGCUGUGGGaCGa -3'
miRNA:   3'- -CGUCgCG-CgUGGCGUG--------CGACAUCC-GC- -5'
28096 3' -59.7 NC_005887.1 + 6292 0.67 0.346846
Target:  5'- aCGGCGUGCGCgaGCGCGUcg-AGGCc -3'
miRNA:   3'- cGUCGCGCGUGg-CGUGCGacaUCCGc -5'
28096 3' -59.7 NC_005887.1 + 11376 0.67 0.346846
Target:  5'- cGCGGgcgucaGCGCAgCCGgaGCGCUGgcGGCc -3'
miRNA:   3'- -CGUCg-----CGCGU-GGCg-UGCGACauCCGc -5'
28096 3' -59.7 NC_005887.1 + 37462 0.67 0.346846
Target:  5'- cGCGGUuugcaGUGCGCCGgAUGCgaucagGgcGGCGg -3'
miRNA:   3'- -CGUCG-----CGCGUGGCgUGCGa-----CauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 41710 0.67 0.338652
Target:  5'- cGCGuGCGCuCGCCGCGCGCUuucaucgcGGCu -3'
miRNA:   3'- -CGU-CGCGcGUGGCGUGCGAcau-----CCGc -5'
28096 3' -59.7 NC_005887.1 + 27034 0.67 0.338652
Target:  5'- gGCgAGCGCGCGaccgCGCACGCUGcc-GCc -3'
miRNA:   3'- -CG-UCGCGCGUg---GCGUGCGACaucCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.