Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28097 | 3' | -49.5 | NC_005887.1 | + | 2048 | 1.1 | 0.003007 |
Target: 5'- gCAUGUCGUCGAGCUCGAACGAAUCGAg -3' miRNA: 3'- -GUACAGCAGCUCGAGCUUGCUUAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 31291 | 0.76 | 0.443955 |
Target: 5'- ---cUCGUCGAGCUCGAcCGGcAUCGGc -3' miRNA: 3'- guacAGCAGCUCGAGCUuGCU-UAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 31835 | 0.73 | 0.574848 |
Target: 5'- aCAUGUCGUCGGGaCUcCGAuaugcACG-AUCGAu -3' miRNA: 3'- -GUACAGCAGCUC-GA-GCU-----UGCuUAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 11062 | 0.73 | 0.620806 |
Target: 5'- gAUGcCgGUCGAGCUCG-ACGAggCGAu -3' miRNA: 3'- gUACaG-CAGCUCGAGCuUGCUuaGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 40475 | 0.71 | 0.689827 |
Target: 5'- --cGUCGaCGAGCUCGAuuACGAggCGu -3' miRNA: 3'- guaCAGCaGCUCGAGCU--UGCUuaGCu -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 25260 | 0.71 | 0.701189 |
Target: 5'- --cGUCGUCGAGguauugCGAGCG-GUCGAg -3' miRNA: 3'- guaCAGCAGCUCga----GCUUGCuUAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 16212 | 0.71 | 0.723679 |
Target: 5'- --cGUCGUCGAGCgccgCGaAACGAAgcgCGc -3' miRNA: 3'- guaCAGCAGCUCGa---GC-UUGCUUa--GCu -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 27199 | 0.71 | 0.723679 |
Target: 5'- cCAUGcCGUCGAGCgccUGcAugGggUCGGu -3' miRNA: 3'- -GUACaGCAGCUCGa--GC-UugCuuAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 1626 | 0.7 | 0.744675 |
Target: 5'- -cUGUCauUCGAGCUCGAggacggcACGAgcGUCGAa -3' miRNA: 3'- guACAGc-AGCUCGAGCU-------UGCU--UAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 28787 | 0.7 | 0.75663 |
Target: 5'- --cGUCGUCGGccuGCUCGGGCGGcagcgcAUCGc -3' miRNA: 3'- guaCAGCAGCU---CGAGCUUGCU------UAGCu -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 1122 | 0.7 | 0.767351 |
Target: 5'- gCGUGUgcuUGUCGAGCUCGGucACGGGcaCGAc -3' miRNA: 3'- -GUACA---GCAGCUCGAGCU--UGCUUa-GCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 40728 | 0.7 | 0.777919 |
Target: 5'- --cGUCcUCGAGCUCGAAUGAcagguagugcGUUGGc -3' miRNA: 3'- guaCAGcAGCUCGAGCUUGCU----------UAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 34685 | 0.69 | 0.798544 |
Target: 5'- --cGUUGUCGAGCagcagCGGGCGGccGUCGu -3' miRNA: 3'- guaCAGCAGCUCGa----GCUUGCU--UAGCu -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 34463 | 0.69 | 0.798544 |
Target: 5'- --cGUCGcCGGccuGCUCGucgGACGAGUCGGa -3' miRNA: 3'- guaCAGCaGCU---CGAGC---UUGCUUAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 36967 | 0.69 | 0.808576 |
Target: 5'- --cGUCGUCucGGCgUCGcGCGggUCGAg -3' miRNA: 3'- guaCAGCAGc-UCG-AGCuUGCuuAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 16973 | 0.69 | 0.818404 |
Target: 5'- aAUGUCGgCGAGCUCGAcuACGGc---- -3' miRNA: 3'- gUACAGCaGCUCGAGCU--UGCUuagcu -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 33904 | 0.68 | 0.846552 |
Target: 5'- --gGUCGUCGuGCUCGGGagugaagccuuCGcGUCGAc -3' miRNA: 3'- guaCAGCAGCuCGAGCUU-----------GCuUAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 21082 | 0.68 | 0.855453 |
Target: 5'- gGUGgCGUUG-GCUUGAACGGuAUCGGc -3' miRNA: 3'- gUACaGCAGCuCGAGCUUGCU-UAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 21456 | 0.68 | 0.864096 |
Target: 5'- --aG-CGUCGAGCaCGGucaGCGggUCGGg -3' miRNA: 3'- guaCaGCAGCUCGaGCU---UGCuuAGCU- -5' |
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28097 | 3' | -49.5 | NC_005887.1 | + | 21895 | 0.67 | 0.895937 |
Target: 5'- ---aUUGcCGAGCgugUUGGACGAAUCGAa -3' miRNA: 3'- guacAGCaGCUCG---AGCUUGCUUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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