miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28097 5' -59 NC_005887.1 + 15513 0.66 0.369633
Target:  5'- cGCCGGCCAGUuuccggacgucgcgaGGUucGuCACGGGCGa- -3'
miRNA:   3'- aCGGCCGGUCG---------------CCGu-C-GUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 36996 0.66 0.366115
Target:  5'- cGCCGGCgAGCacgcGCAGgccguaCGCGAACAc- -3'
miRNA:   3'- aCGGCCGgUCGc---CGUC------GUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 27364 0.66 0.366115
Target:  5'- cGCCugcGGCCugcGCGGCcuGCGCG-GCGUAg -3'
miRNA:   3'- aCGG---CCGGu--CGCCGu-CGUGCuUGUAU- -5'
28097 5' -59 NC_005887.1 + 15243 0.66 0.363491
Target:  5'- cGgCGGCCcgaAGCaGGCAGCcgcagugcugcgcgGCGAGCGUc -3'
miRNA:   3'- aCgGCCGG---UCG-CCGUCG--------------UGCUUGUAu -5'
28097 5' -59 NC_005887.1 + 41783 0.67 0.36088
Target:  5'- cGCCcaucuGGCCGGCGGUcuucgcgcuguauccGGCGCGGcgcGCGg- -3'
miRNA:   3'- aCGG-----CCGGUCGCCG---------------UCGUGCU---UGUau -5'
28097 5' -59 NC_005887.1 + 10514 0.67 0.35742
Target:  5'- aGCCGuaUucggaacggGGCGGCGGCAagaaGGGCAUGa -3'
miRNA:   3'- aCGGCcgG---------UCGCCGUCGUg---CUUGUAU- -5'
28097 5' -59 NC_005887.1 + 27346 0.67 0.35742
Target:  5'- cGCCacGCgCAGCGGCGcGCagACGAGCGUc -3'
miRNA:   3'- aCGGc-CG-GUCGCCGU-CG--UGCUUGUAu -5'
28097 5' -59 NC_005887.1 + 26413 0.67 0.348871
Target:  5'- gGUCGaGCUGGCGGCcGCGCGGgaACGc- -3'
miRNA:   3'- aCGGC-CGGUCGCCGuCGUGCU--UGUau -5'
28097 5' -59 NC_005887.1 + 19493 0.67 0.348871
Target:  5'- aG-CGGCCGGCGGCcGU-CGAugGUAc -3'
miRNA:   3'- aCgGCCGGUCGCCGuCGuGCUugUAU- -5'
28097 5' -59 NC_005887.1 + 37731 0.67 0.348871
Target:  5'- cGgCGGCCAcCGGCGccGCGgCGAGCAUc -3'
miRNA:   3'- aCgGCCGGUcGCCGU--CGU-GCUUGUAu -5'
28097 5' -59 NC_005887.1 + 25958 0.67 0.348871
Target:  5'- -uCCGGCCGGCGGCcGUcuCGAcuGCAUu -3'
miRNA:   3'- acGGCCGGUCGCCGuCGu-GCU--UGUAu -5'
28097 5' -59 NC_005887.1 + 24241 0.67 0.343812
Target:  5'- cUGCUGGCCAcguGcCGGCAGCAgccacggcgagucgcCGGAUAg- -3'
miRNA:   3'- -ACGGCCGGU---C-GCCGUCGU---------------GCUUGUau -5'
28097 5' -59 NC_005887.1 + 19573 0.67 0.340469
Target:  5'- gGCCGcGCCGGCGuCgAGCcaACGAGCAc- -3'
miRNA:   3'- aCGGC-CGGUCGCcG-UCG--UGCUUGUau -5'
28097 5' -59 NC_005887.1 + 5410 0.67 0.340469
Target:  5'- -aCCGGCgGGCGGCgccgcagcgaccGGCGCGAcCAc- -3'
miRNA:   3'- acGGCCGgUCGCCG------------UCGUGCUuGUau -5'
28097 5' -59 NC_005887.1 + 14014 0.67 0.332214
Target:  5'- aUGCCGcGCCGGCG-CAGaCGCcGACAa- -3'
miRNA:   3'- -ACGGC-CGGUCGCcGUC-GUGcUUGUau -5'
28097 5' -59 NC_005887.1 + 9602 0.67 0.332214
Target:  5'- gGCgCGcGCCGGCGcGCA-CGCGAGCGc- -3'
miRNA:   3'- aCG-GC-CGGUCGC-CGUcGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 10108 0.67 0.332214
Target:  5'- cGCCgacGGCCAGCugaucGGCuGCACGuACGa- -3'
miRNA:   3'- aCGG---CCGGUCG-----CCGuCGUGCuUGUau -5'
28097 5' -59 NC_005887.1 + 11829 0.67 0.332214
Target:  5'- cGgCGGCCuguucuCGaGCAGCACGGGCGg- -3'
miRNA:   3'- aCgGCCGGuc----GC-CGUCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 34924 0.67 0.331397
Target:  5'- cGCCaGCCcaaacgaGGCGGCGGCggguGCGAcCGUGg -3'
miRNA:   3'- aCGGcCGG-------UCGCCGUCG----UGCUuGUAU- -5'
28097 5' -59 NC_005887.1 + 18599 0.67 0.331397
Target:  5'- aGUCGGCCGauuacgguucguuGCucGGCAGCGCGAucgGCGg- -3'
miRNA:   3'- aCGGCCGGU-------------CG--CCGUCGUGCU---UGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.