Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28098 | 3' | -53.8 | NC_005887.1 | + | 14403 | 0.68 | 0.613107 |
|
Target: 5'- cGU--ACGaCCUGUCCgACACGUucaaGCCGGa -3' miRNA: 3'- uCAucUGC-GGACAGG-UGUGCA----UGGUC- -5' |
|||||||
| 28098 | 3' | -53.8 | NC_005887.1 | + | 8553 | 0.68 | 0.601795 |
|
Target: 5'- cGUGGugGCCguggGUCCGCGCuUGgUGGa -3' miRNA: 3'- uCAUCugCGGa---CAGGUGUGcAUgGUC- -5' |
|||||||
| 28098 | 3' | -53.8 | NC_005887.1 | + | 867 | 0.69 | 0.556916 |
|
Target: 5'- cGUGGACGCgUGgcCCGCGCc-GCCGGa -3' miRNA: 3'- uCAUCUGCGgACa-GGUGUGcaUGGUC- -5' |
|||||||
| 28098 | 3' | -53.8 | NC_005887.1 | + | 17544 | 0.69 | 0.534824 |
|
Target: 5'- ---uGACGUCgGUCgGCGCGUACUGGa -3' miRNA: 3'- ucauCUGCGGaCAGgUGUGCAUGGUC- -5' |
|||||||
| 28098 | 3' | -53.8 | NC_005887.1 | + | 10354 | 0.69 | 0.513048 |
|
Target: 5'- cGUGGACGCCgGUaUCACguacaacgGCGUGCCGa -3' miRNA: 3'- uCAUCUGCGGaCA-GGUG--------UGCAUGGUc -5' |
|||||||
| 28098 | 3' | -53.8 | NC_005887.1 | + | 1340 | 1.1 | 0.000896 |
|
Target: 5'- cAGUAGACGCCUGUCCACACGUACCAGg -3' miRNA: 3'- -UCAUCUGCGGACAGGUGUGCAUGGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home