miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28098 5' -58.8 NC_005887.1 + 15613 0.67 0.430313
Target:  5'- -aCGGGCGuCGcGCAgCAGGCggCCGgGCu -3'
miRNA:   3'- gaGCCCGU-GCaUGUaGUCCG--GGCgCG- -5'
28098 5' -58.8 NC_005887.1 + 29518 0.67 0.430313
Target:  5'- -gCGGGCGCGUuguagaacagcACGUCGcgcgcgacGGCCUG-GCa -3'
miRNA:   3'- gaGCCCGUGCA-----------UGUAGU--------CCGGGCgCG- -5'
28098 5' -58.8 NC_005887.1 + 24941 0.67 0.420866
Target:  5'- aUCGcGaCGCGUGCGcgCGGGCCgccuugCGCGCg -3'
miRNA:   3'- gAGCcC-GUGCAUGUa-GUCCGG------GCGCG- -5'
28098 5' -58.8 NC_005887.1 + 38075 0.67 0.406015
Target:  5'- cCUCGcGCGCGauCAUCGGGCCgagcaguucagacugCGUGCg -3'
miRNA:   3'- -GAGCcCGUGCauGUAGUCCGG---------------GCGCG- -5'
28098 5' -58.8 NC_005887.1 + 21869 0.67 0.402353
Target:  5'- -cUGGcGCACagcagcuCAUCAgcacguGGCCCGCGCg -3'
miRNA:   3'- gaGCC-CGUGcau----GUAGU------CCGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 16438 0.67 0.402353
Target:  5'- -aCGGGaucgagaacCGCGUGCGcgCGGGCaugcgcucgaCCGCGCg -3'
miRNA:   3'- gaGCCC---------GUGCAUGUa-GUCCG----------GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 16494 0.67 0.384366
Target:  5'- -gCGGGCugGUcgGCGaugucgCAGGCCgauCGCGUc -3'
miRNA:   3'- gaGCCCGugCA--UGUa-----GUCCGG---GCGCG- -5'
28098 5' -58.8 NC_005887.1 + 26072 0.67 0.384366
Target:  5'- -cUGGucaGCGCGU-CAgc-GGCCCGCGCg -3'
miRNA:   3'- gaGCC---CGUGCAuGUaguCCGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 38137 0.67 0.384366
Target:  5'- -cCGcGGCGaugaaaaugcCGgACAUCAGGCCgaGCGCg -3'
miRNA:   3'- gaGC-CCGU----------GCaUGUAGUCCGGg-CGCG- -5'
28098 5' -58.8 NC_005887.1 + 14840 0.68 0.374703
Target:  5'- -gCGGGCACGUuCG-CGGGCgugcacaCCGCaGCa -3'
miRNA:   3'- gaGCCCGUGCAuGUaGUCCG-------GGCG-CG- -5'
28098 5' -58.8 NC_005887.1 + 2370 0.68 0.366919
Target:  5'- gUCGGGcCACG-GCGUCucGCCCuuGUGCg -3'
miRNA:   3'- gAGCCC-GUGCaUGUAGucCGGG--CGCG- -5'
28098 5' -58.8 NC_005887.1 + 27870 0.68 0.366919
Target:  5'- -gCGGGCACGaucUGCGcgAGGCCCGacacgaCGCc -3'
miRNA:   3'- gaGCCCGUGC---AUGUagUCCGGGC------GCG- -5'
28098 5' -58.8 NC_005887.1 + 10202 0.68 0.366919
Target:  5'- gUCGaGUGCGUcGCGUCGauGCCCGCGCc -3'
miRNA:   3'- gAGCcCGUGCA-UGUAGUc-CGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 14479 0.68 0.366919
Target:  5'- gUCGGGCcucGCGcAgAUCGuGCCCGcCGCg -3'
miRNA:   3'- gAGCCCG---UGCaUgUAGUcCGGGC-GCG- -5'
28098 5' -58.8 NC_005887.1 + 27924 0.68 0.358403
Target:  5'- -gCGGuuGCGcGCGUCGGGUCCGCu- -3'
miRNA:   3'- gaGCCcgUGCaUGUAGUCCGGGCGcg -5'
28098 5' -58.8 NC_005887.1 + 33499 0.68 0.358403
Target:  5'- -aCGGGCGCGccgGCGUUcacaAGcuGCCCGCGa -3'
miRNA:   3'- gaGCCCGUGCa--UGUAG----UC--CGGGCGCg -5'
28098 5' -58.8 NC_005887.1 + 39410 0.68 0.350026
Target:  5'- gUCGcGGCG-GUGCcgCGGcGCuuGCGCa -3'
miRNA:   3'- gAGC-CCGUgCAUGuaGUC-CGggCGCG- -5'
28098 5' -58.8 NC_005887.1 + 37863 0.68 0.341789
Target:  5'- -gCGGGCGCGguuguuagGCGgagauaAGGCCCGUaaaGCg -3'
miRNA:   3'- gaGCCCGUGCa-------UGUag----UCCGGGCG---CG- -5'
28098 5' -58.8 NC_005887.1 + 40842 0.68 0.333693
Target:  5'- -cCGGGUACGUGuuCcgCAcGGCcgcgCCGCGCg -3'
miRNA:   3'- gaGCCCGUGCAU--GuaGU-CCG----GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 23275 0.68 0.333693
Target:  5'- gCUCGuGGCGguUGCcgCA-GCCCGCGCc -3'
miRNA:   3'- -GAGC-CCGUgcAUGuaGUcCGGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.