Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28099 | 5' | -57.8 | NC_005887.1 | + | 1272 | 1.07 | 0.000682 |
Target: 5'- cCUCGUCCACGAGCGCGCGGAUCGUGUc -3' miRNA: 3'- -GAGCAGGUGCUCGCGCGCCUAGCACA- -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 991 | 0.73 | 0.21281 |
Target: 5'- gCUCGaacgcuUCCcgGCG-GCGCGCGGAUCGUa- -3' miRNA: 3'- -GAGC------AGG--UGCuCGCGCGCCUAGCAca -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 38384 | 0.73 | 0.21281 |
Target: 5'- cCUCGUUCGCGAGCaacgGCGGGUCGa-- -3' miRNA: 3'- -GAGCAGGUGCUCGcg--CGCCUAGCaca -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 1137 | 0.7 | 0.296907 |
Target: 5'- gCUCGgUCACGGGCacgacgacGCGCGGGUCGg-- -3' miRNA: 3'- -GAGCaGGUGCUCG--------CGCGCCUAGCaca -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 33467 | 0.69 | 0.360404 |
Target: 5'- --gGUCCGCGAGCGCGUacGGcGUCGcGa -3' miRNA: 3'- gagCAGGUGCUCGCGCG--CC-UAGCaCa -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 27135 | 0.69 | 0.363817 |
Target: 5'- aCUCGUCgGCGAucacgcggccgaacgGCcacggGCGCGGGUUGUGc -3' miRNA: 3'- -GAGCAGgUGCU---------------CG-----CGCGCCUAGCACa -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 29557 | 0.69 | 0.368977 |
Target: 5'- cCUCGUUCACGAGggucaGCGCcuGAUUGUGc -3' miRNA: 3'- -GAGCAGGUGCUCg----CGCGc-CUAGCACa -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 19164 | 0.68 | 0.395523 |
Target: 5'- aCUCGgcaccgauuauUCCGUGAGCgGCGCGGG-CGUGg -3' miRNA: 3'- -GAGC-----------AGGUGCUCG-CGCGCCUaGCACa -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 36968 | 0.68 | 0.413892 |
Target: 5'- gUCGUCUcgGCGu-CGCGCGGGUCGa-- -3' miRNA: 3'- gAGCAGG--UGCucGCGCGCCUAGCaca -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 7015 | 0.68 | 0.423271 |
Target: 5'- gCUCGUggccggccgCCGCG-GCGCGCGGca-GUGg -3' miRNA: 3'- -GAGCA---------GGUGCuCGCGCGCCuagCACa -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 28282 | 0.67 | 0.432777 |
Target: 5'- aUCGgcaCGcCGAGCGCGCGcagcGUCGUGg -3' miRNA: 3'- gAGCag-GU-GCUCGCGCGCc---UAGCACa -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 6013 | 0.67 | 0.470993 |
Target: 5'- cCUCGUCgGCcuauaccuggaucGAGUGCGCGGcGUCGa-- -3' miRNA: 3'- -GAGCAGgUG-------------CUCGCGCGCC-UAGCaca -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 7434 | 0.67 | 0.471996 |
Target: 5'- cCUCGUUuggCGCuGGCGUGCGcGUCGUGa -3' miRNA: 3'- -GAGCAG---GUGcUCGCGCGCcUAGCACa -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 11550 | 0.67 | 0.48208 |
Target: 5'- gCUCGg-CGCGcAGCGCGCGGcgGUCGcGg -3' miRNA: 3'- -GAGCagGUGC-UCGCGCGCC--UAGCaCa -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 40474 | 0.66 | 0.544565 |
Target: 5'- -gCGUCgACGAGCucgauuacgagGCGUGGcgcgacGUCGUGUu -3' miRNA: 3'- gaGCAGgUGCUCG-----------CGCGCC------UAGCACA- -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 13948 | 0.66 | 0.544565 |
Target: 5'- uUCGUCacggacaagACGGGCGCGCGGucaCG-GUg -3' miRNA: 3'- gAGCAGg--------UGCUCGCGCGCCua-GCaCA- -5' |
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28099 | 5' | -57.8 | NC_005887.1 | + | 34967 | 0.66 | 0.544565 |
Target: 5'- gUCGUCgGCGAGCugaaCGCGGcguuGUCGUc- -3' miRNA: 3'- gAGCAGgUGCUCGc---GCGCC----UAGCAca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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