miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2810 3' -63.9 NC_001491.2 + 2537 0.66 0.578111
Target:  5'- aCGGCagaguCGCauuCCCCCgUCGGCCuGGCAgGg -3'
miRNA:   3'- -GCCG-----GUGgu-GGGGG-AGCUGG-CCGUgC- -5'
2810 3' -63.9 NC_001491.2 + 3094 0.66 0.578111
Target:  5'- aGGuCUACUACCCUUcCGGCCaGGCAgCGa -3'
miRNA:   3'- gCC-GGUGGUGGGGGaGCUGG-CCGU-GC- -5'
2810 3' -63.9 NC_001491.2 + 5404 0.66 0.578111
Target:  5'- gCGGCCGCCAgCUCCauagCGGaugucugcaGGCGCGu -3'
miRNA:   3'- -GCCGGUGGUgGGGGa---GCUgg-------CCGUGC- -5'
2810 3' -63.9 NC_001491.2 + 7375 0.69 0.384521
Target:  5'- -uGCCugCGCgccaagcaCCUUCGAUCGGCACGu -3'
miRNA:   3'- gcCGGugGUGg-------GGGAGCUGGCCGUGC- -5'
2810 3' -63.9 NC_001491.2 + 8040 0.66 0.559136
Target:  5'- aCGGUUccuguGCCACCCCCUUaccucCUGGCAgGg -3'
miRNA:   3'- -GCCGG-----UGGUGGGGGAGcu---GGCCGUgC- -5'
2810 3' -63.9 NC_001491.2 + 8809 0.71 0.318551
Target:  5'- cCGGCC-CCGCUCCagucuaUCGAgUGGCACu -3'
miRNA:   3'- -GCCGGuGGUGGGGg-----AGCUgGCCGUGc -5'
2810 3' -63.9 NC_001491.2 + 9610 0.66 0.606815
Target:  5'- cCGGCCGCaccuaACCCCaCUgGGCUGGaucuCACc -3'
miRNA:   3'- -GCCGGUGg----UGGGG-GAgCUGGCC----GUGc -5'
2810 3' -63.9 NC_001491.2 + 12303 0.68 0.485395
Target:  5'- -cGCCACCAgCCCCUCuGGCCagaccaaGCACc -3'
miRNA:   3'- gcCGGUGGUgGGGGAG-CUGGc------CGUGc -5'
2810 3' -63.9 NC_001491.2 + 17942 0.68 0.441721
Target:  5'- uGGCCAuguCCACCaugcguCCCa-GGCCGGCGCc -3'
miRNA:   3'- gCCGGU---GGUGG------GGGagCUGGCCGUGc -5'
2810 3' -63.9 NC_001491.2 + 20026 0.68 0.458061
Target:  5'- -aGCUGCCaaACCUCCUCGACCagagugcugcgggGGCGCa -3'
miRNA:   3'- gcCGGUGG--UGGGGGAGCUGG-------------CCGUGc -5'
2810 3' -63.9 NC_001491.2 + 34485 0.73 0.233494
Target:  5'- uCGGCCACgCGCgCCCUgGcCCGGgACGa -3'
miRNA:   3'- -GCCGGUG-GUGgGGGAgCuGGCCgUGC- -5'
2810 3' -63.9 NC_001491.2 + 35996 0.66 0.606815
Target:  5'- cCGGCCcuuauuGCCaACCCCCUCugGGCCcuGGC-Ca -3'
miRNA:   3'- -GCCGG------UGG-UGGGGGAG--CUGG--CCGuGc -5'
2810 3' -63.9 NC_001491.2 + 38539 0.66 0.568604
Target:  5'- uCGGCCACCAgUCUUUCGGUCaGGUAUGu -3'
miRNA:   3'- -GCCGGUGGUgGGGGAGCUGG-CCGUGC- -5'
2810 3' -63.9 NC_001491.2 + 41167 0.71 0.311768
Target:  5'- uGGCUAUCGCCUCCUCGAa-GGCGg- -3'
miRNA:   3'- gCCGGUGGUGGGGGAGCUggCCGUgc -5'
2810 3' -63.9 NC_001491.2 + 43041 0.68 0.47649
Target:  5'- gCGGCCGCCGCCCguCCgcuuUCG-CCGGgagaGCGc -3'
miRNA:   3'- -GCCGGUGGUGGG--GG----AGCuGGCCg---UGC- -5'
2810 3' -63.9 NC_001491.2 + 45114 0.67 0.512564
Target:  5'- gGGCCGCCGCagaUUUGGCCGGgGCc -3'
miRNA:   3'- gCCGGUGGUGgggGAGCUGGCCgUGc -5'
2810 3' -63.9 NC_001491.2 + 45147 0.67 0.512564
Target:  5'- gGGCCGCCGCagaUUUGGCCGGgGCc -3'
miRNA:   3'- gCCGGUGGUGgggGAGCUGGCCgUGc -5'
2810 3' -63.9 NC_001491.2 + 45180 0.67 0.512564
Target:  5'- gGGCCGCCGCagaUUUGGCCGGgGCc -3'
miRNA:   3'- gCCGGUGGUGgggGAGCUGGCCgUGc -5'
2810 3' -63.9 NC_001491.2 + 45213 0.67 0.512564
Target:  5'- gGGCCGCCGCagaUUUGGCCGGgGCc -3'
miRNA:   3'- gCCGGUGGUGgggGAGCUGGCCgUGc -5'
2810 3' -63.9 NC_001491.2 + 45246 0.67 0.512564
Target:  5'- gGGCCGCCGCagaUUUGGCCGGgGCc -3'
miRNA:   3'- gCCGGUGGUGgggGAGCUGGCCgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.