miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2810 3' -63.9 NC_001491.2 + 49674 0.7 0.361554
Target:  5'- gGGCCaaacaccccACCGCCCCCaUCcGCCGGC-Cu -3'
miRNA:   3'- gCCGG---------UGGUGGGGG-AGcUGGCCGuGc -5'
2810 3' -63.9 NC_001491.2 + 50342 0.66 0.568604
Target:  5'- -cGCCGCCACCCacgCCgcagUCG-CCGGCgaGCGg -3'
miRNA:   3'- gcCGGUGGUGGG---GG----AGCuGGCCG--UGC- -5'
2810 3' -63.9 NC_001491.2 + 56461 0.7 0.376759
Target:  5'- -cGCUGCCAUCCCCUUGgcGCUGaGCGCGu -3'
miRNA:   3'- gcCGGUGGUGGGGGAGC--UGGC-CGUGC- -5'
2810 3' -63.9 NC_001491.2 + 62430 0.66 0.606815
Target:  5'- cCGcGCCuCCACCUCCUCGACgauGCAg- -3'
miRNA:   3'- -GC-CGGuGGUGGGGGAGCUGgc-CGUgc -5'
2810 3' -63.9 NC_001491.2 + 64838 0.66 0.606815
Target:  5'- aGGCCAUCACCCCCgcUUG-UCuGUugGg -3'
miRNA:   3'- gCCGGUGGUGGGGG--AGCuGGcCGugC- -5'
2810 3' -63.9 NC_001491.2 + 77626 0.66 0.568604
Target:  5'- uCGGCCGCUACCCCagUgGugCcucccacggaGGCACc -3'
miRNA:   3'- -GCCGGUGGUGGGGg-AgCugG----------CCGUGc -5'
2810 3' -63.9 NC_001491.2 + 80533 0.66 0.549713
Target:  5'- gCGGUgGCgGuuCCCgCGuCCGGCGCGg -3'
miRNA:   3'- -GCCGgUGgUggGGGaGCuGGCCGUGC- -5'
2810 3' -63.9 NC_001491.2 + 81322 0.68 0.482715
Target:  5'- aCGGCgGCCuggccgugggcaacGCCCgCCggcgUGGCCGGCAUc -3'
miRNA:   3'- -GCCGgUGG--------------UGGG-GGa---GCUGGCCGUGc -5'
2810 3' -63.9 NC_001491.2 + 86335 0.71 0.332446
Target:  5'- aGGCguCCGCCCCCcCcGCCaGGCugGg -3'
miRNA:   3'- gCCGguGGUGGGGGaGcUGG-CCGugC- -5'
2810 3' -63.9 NC_001491.2 + 97563 0.67 0.494377
Target:  5'- uGGUCGCCACCgCCUUcacccgcaGACgCGGCGgGu -3'
miRNA:   3'- gCCGGUGGUGGgGGAG--------CUG-GCCGUgC- -5'
2810 3' -63.9 NC_001491.2 + 99763 0.72 0.285739
Target:  5'- --aCCACaACCCCUUUGACCaGGCACGg -3'
miRNA:   3'- gccGGUGgUGGGGGAGCUGG-CCGUGC- -5'
2810 3' -63.9 NC_001491.2 + 101843 0.66 0.559136
Target:  5'- gCGGCUcaaGCgCGCCCCCggcgCGACCGucCACc -3'
miRNA:   3'- -GCCGG---UG-GUGGGGGa---GCUGGCc-GUGc -5'
2810 3' -63.9 NC_001491.2 + 107073 0.74 0.189519
Target:  5'- gCGGCCACCAgCCCC-C-ACgGGCACa -3'
miRNA:   3'- -GCCGGUGGUgGGGGaGcUGgCCGUGc -5'
2810 3' -63.9 NC_001491.2 + 111199 0.7 0.369103
Target:  5'- aGGCCGgCugCCCCagGACCagcuagucGGCGCa -3'
miRNA:   3'- gCCGGUgGugGGGGagCUGG--------CCGUGc -5'
2810 3' -63.9 NC_001491.2 + 114593 0.74 0.195847
Target:  5'- gGGCCugGCUGCgCCCCguguaccucgccugCGGCCGGCGCGg -3'
miRNA:   3'- gCCGG--UGGUG-GGGGa-------------GCUGGCCGUGC- -5'
2810 3' -63.9 NC_001491.2 + 115304 0.74 0.203305
Target:  5'- cCGGCCuCC-CCCCCggCGGCucuCGGCGCGa -3'
miRNA:   3'- -GCCGGuGGuGGGGGa-GCUG---GCCGUGC- -5'
2810 3' -63.9 NC_001491.2 + 115478 0.71 0.331741
Target:  5'- gCGGCCcgcugcaGCgGCCCCC-CGGCCcgggacGGCGCGc -3'
miRNA:   3'- -GCCGG-------UGgUGGGGGaGCUGG------CCGUGC- -5'
2810 3' -63.9 NC_001491.2 + 115937 0.66 0.549713
Target:  5'- gCGGCCGCCuccccgGCCCaCCUCaGCCaGGagGCGa -3'
miRNA:   3'- -GCCGGUGG------UGGG-GGAGcUGG-CCg-UGC- -5'
2810 3' -63.9 NC_001491.2 + 116820 0.69 0.424883
Target:  5'- aGGCCGCCGCUgCCgCGGCCaGCcaGCa -3'
miRNA:   3'- gCCGGUGGUGGgGGaGCUGGcCG--UGc -5'
2810 3' -63.9 NC_001491.2 + 117854 0.73 0.223033
Target:  5'- gGGCCGCCACCCCgaaGAgcugccgcuCCGGCGCc -3'
miRNA:   3'- gCCGGUGGUGGGGgagCU---------GGCCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.