miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2810 3' -63.9 NC_001491.2 + 118334 0.72 0.285739
Target:  5'- gCGGCUGCCGCCCagCCggCGuccCCGGCACc -3'
miRNA:   3'- -GCCGGUGGUGGG--GGa-GCu--GGCCGUGc -5'
2810 3' -63.9 NC_001491.2 + 118919 0.66 0.578111
Target:  5'- gGGCgGCUuCUgCCUCGGCggagcuCGGCGCGg -3'
miRNA:   3'- gCCGgUGGuGGgGGAGCUG------GCCGUGC- -5'
2810 3' -63.9 NC_001491.2 + 122580 0.66 0.606815
Target:  5'- -cGCUACCGCUCCCcCaGCCGGgGCu -3'
miRNA:   3'- gcCGGUGGUGGGGGaGcUGGCCgUGc -5'
2810 3' -63.9 NC_001491.2 + 123094 0.69 0.40036
Target:  5'- gCGuCCGCUGCCUCCgcCGACaCGGCGCGc -3'
miRNA:   3'- -GCcGGUGGUGGGGGa-GCUG-GCCGUGC- -5'
2810 3' -63.9 NC_001491.2 + 123135 0.66 0.559136
Target:  5'- gCGGCCAg-GCCUCCgcgggCGGCCcGGCGCc -3'
miRNA:   3'- -GCCGGUggUGGGGGa----GCUGG-CCGUGc -5'
2810 3' -63.9 NC_001491.2 + 123238 0.69 0.433254
Target:  5'- aGG-UACCGCCCCa-CGGCgCGGCGCa -3'
miRNA:   3'- gCCgGUGGUGGGGgaGCUG-GCCGUGc -5'
2810 3' -63.9 NC_001491.2 + 125512 0.68 0.480042
Target:  5'- aCGGCCGCCGCcgcgacgccgccccgCCCCgggGACCcgcgGGCGCc -3'
miRNA:   3'- -GCCGGUGGUG---------------GGGGag-CUGG----CCGUGc -5'
2810 3' -63.9 NC_001491.2 + 130644 0.66 0.597223
Target:  5'- gGGCUACCccgacgACCCCCUgcgCGACCucuguGGUGCc -3'
miRNA:   3'- gCCGGUGG------UGGGGGA---GCUGG-----CCGUGc -5'
2810 3' -63.9 NC_001491.2 + 130809 0.68 0.482715
Target:  5'- aGaGUCGCCACCCCCagcucuaugaugggUCGGuCUGGCGgGa -3'
miRNA:   3'- gC-CGGUGGUGGGGG--------------AGCU-GGCCGUgC- -5'
2810 3' -63.9 NC_001491.2 + 134017 0.72 0.285739
Target:  5'- uCGGCCGCCgaugcGCCCCCcUGuCCGGaGCGg -3'
miRNA:   3'- -GCCGGUGG-----UGGGGGaGCuGGCCgUGC- -5'
2810 3' -63.9 NC_001491.2 + 137623 0.67 0.54034
Target:  5'- aCGGCCGCCGCCgCggcagCGGCCgccccGGgGCGg -3'
miRNA:   3'- -GCCGGUGGUGGgGga---GCUGG-----CCgUGC- -5'
2810 3' -63.9 NC_001491.2 + 138314 1.07 0.000887
Target:  5'- cCGGCCACCACCCCCUCGACCGGCACGc -3'
miRNA:   3'- -GCCGGUGGUGGGGGAGCUGGCCGUGC- -5'
2810 3' -63.9 NC_001491.2 + 138580 0.68 0.45893
Target:  5'- uCGGCCccuGCCAauuugugaUCCCCUCGGCgaUGGCGgGg -3'
miRNA:   3'- -GCCGG---UGGU--------GGGGGAGCUG--GCCGUgC- -5'
2810 3' -63.9 NC_001491.2 + 143053 0.74 0.198616
Target:  5'- cCGGCC-CCACCCCaUCGACguaacaCGGCGCc -3'
miRNA:   3'- -GCCGGuGGUGGGGgAGCUG------GCCGUGc -5'
2810 3' -63.9 NC_001491.2 + 144198 0.69 0.408434
Target:  5'- gGGCCucggaGCCACCCCCUCGGgacaUCGuuGUugGa -3'
miRNA:   3'- gCCGG-----UGGUGGGGGAGCU----GGC--CGugC- -5'
2810 3' -63.9 NC_001491.2 + 144693 0.67 0.54034
Target:  5'- gGGCUgggugaACC-CCUCUUCGGCCGcGCugGc -3'
miRNA:   3'- gCCGG------UGGuGGGGGAGCUGGC-CGugC- -5'
2810 3' -63.9 NC_001491.2 + 144852 0.68 0.45893
Target:  5'- aGGaCCGCCGCUgCCggCGGCCGaGgGCGa -3'
miRNA:   3'- gCC-GGUGGUGGgGGa-GCUGGC-CgUGC- -5'
2810 3' -63.9 NC_001491.2 + 145559 0.68 0.45893
Target:  5'- cCGGCCcggcggagaaGCCAUCCCCgCGGgCGGUuCGg -3'
miRNA:   3'- -GCCGG----------UGGUGGGGGaGCUgGCCGuGC- -5'
2810 3' -63.9 NC_001491.2 + 145696 0.77 0.129127
Target:  5'- aCGGCCGuCUgcgggGCCUCCUCGGCCGGUGCc -3'
miRNA:   3'- -GCCGGU-GG-----UGGGGGAGCUGGCCGUGc -5'
2810 3' -63.9 NC_001491.2 + 146717 0.7 0.361554
Target:  5'- gGGCCGCCGUCUCCagccCGGCCGGguUGg -3'
miRNA:   3'- gCCGGUGGUGGGGGa---GCUGGCCguGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.