Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2810 | 3' | -63.9 | NC_001491.2 | + | 125512 | 0.68 | 0.480042 |
Target: 5'- aCGGCCGCCGCcgcgacgccgccccgCCCCgggGACCcgcgGGCGCc -3' miRNA: 3'- -GCCGGUGGUG---------------GGGGag-CUGG----CCGUGc -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 123238 | 0.69 | 0.433254 |
Target: 5'- aGG-UACCGCCCCa-CGGCgCGGCGCa -3' miRNA: 3'- gCCgGUGGUGGGGgaGCUG-GCCGUGc -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 123135 | 0.66 | 0.559136 |
Target: 5'- gCGGCCAg-GCCUCCgcgggCGGCCcGGCGCc -3' miRNA: 3'- -GCCGGUggUGGGGGa----GCUGG-CCGUGc -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 123094 | 0.69 | 0.40036 |
Target: 5'- gCGuCCGCUGCCUCCgcCGACaCGGCGCGc -3' miRNA: 3'- -GCcGGUGGUGGGGGa-GCUG-GCCGUGC- -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 122580 | 0.66 | 0.606815 |
Target: 5'- -cGCUACCGCUCCCcCaGCCGGgGCu -3' miRNA: 3'- gcCGGUGGUGGGGGaGcUGGCCgUGc -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 118919 | 0.66 | 0.578111 |
Target: 5'- gGGCgGCUuCUgCCUCGGCggagcuCGGCGCGg -3' miRNA: 3'- gCCGgUGGuGGgGGAGCUG------GCCGUGC- -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 118334 | 0.72 | 0.285739 |
Target: 5'- gCGGCUGCCGCCCagCCggCGuccCCGGCACc -3' miRNA: 3'- -GCCGGUGGUGGG--GGa-GCu--GGCCGUGc -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 117854 | 0.73 | 0.223033 |
Target: 5'- gGGCCGCCACCCCgaaGAgcugccgcuCCGGCGCc -3' miRNA: 3'- gCCGGUGGUGGGGgagCU---------GGCCGUGc -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 116820 | 0.69 | 0.424883 |
Target: 5'- aGGCCGCCGCUgCCgCGGCCaGCcaGCa -3' miRNA: 3'- gCCGGUGGUGGgGGaGCUGGcCG--UGc -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 115937 | 0.66 | 0.549713 |
Target: 5'- gCGGCCGCCuccccgGCCCaCCUCaGCCaGGagGCGa -3' miRNA: 3'- -GCCGGUGG------UGGG-GGAGcUGG-CCg-UGC- -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 115478 | 0.71 | 0.331741 |
Target: 5'- gCGGCCcgcugcaGCgGCCCCC-CGGCCcgggacGGCGCGc -3' miRNA: 3'- -GCCGG-------UGgUGGGGGaGCUGG------CCGUGC- -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 115304 | 0.74 | 0.203305 |
Target: 5'- cCGGCCuCC-CCCCCggCGGCucuCGGCGCGa -3' miRNA: 3'- -GCCGGuGGuGGGGGa-GCUG---GCCGUGC- -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 114593 | 0.74 | 0.195847 |
Target: 5'- gGGCCugGCUGCgCCCCguguaccucgccugCGGCCGGCGCGg -3' miRNA: 3'- gCCGG--UGGUG-GGGGa-------------GCUGGCCGUGC- -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 111199 | 0.7 | 0.369103 |
Target: 5'- aGGCCGgCugCCCCagGACCagcuagucGGCGCa -3' miRNA: 3'- gCCGGUgGugGGGGagCUGG--------CCGUGc -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 107073 | 0.74 | 0.189519 |
Target: 5'- gCGGCCACCAgCCCC-C-ACgGGCACa -3' miRNA: 3'- -GCCGGUGGUgGGGGaGcUGgCCGUGc -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 101843 | 0.66 | 0.559136 |
Target: 5'- gCGGCUcaaGCgCGCCCCCggcgCGACCGucCACc -3' miRNA: 3'- -GCCGG---UG-GUGGGGGa---GCUGGCc-GUGc -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 99763 | 0.72 | 0.285739 |
Target: 5'- --aCCACaACCCCUUUGACCaGGCACGg -3' miRNA: 3'- gccGGUGgUGGGGGAGCUGG-CCGUGC- -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 97563 | 0.67 | 0.494377 |
Target: 5'- uGGUCGCCACCgCCUUcacccgcaGACgCGGCGgGu -3' miRNA: 3'- gCCGGUGGUGGgGGAG--------CUG-GCCGUgC- -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 86335 | 0.71 | 0.332446 |
Target: 5'- aGGCguCCGCCCCCcCcGCCaGGCugGg -3' miRNA: 3'- gCCGguGGUGGGGGaGcUGG-CCGugC- -5' |
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2810 | 3' | -63.9 | NC_001491.2 | + | 81322 | 0.68 | 0.482715 |
Target: 5'- aCGGCgGCCuggccgugggcaacGCCCgCCggcgUGGCCGGCAUc -3' miRNA: 3'- -GCCGgUGG--------------UGGG-GGa---GCUGGCCGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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