miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28100 3' -59.7 NC_005887.1 + 23245 0.66 0.384366
Target:  5'- aGCGGCGgcgGUCGGcgcgcaaaaggcGCAGCuCGUggcgguugccgcAGCCCg -3'
miRNA:   3'- -CGCCGCa--CGGCU------------CGUCGcGUA------------UCGGG- -5'
28100 3' -59.7 NC_005887.1 + 7603 0.66 0.383481
Target:  5'- aGCGGCGccgGUugaucgaUGGGCGGCGacugcuGCCCg -3'
miRNA:   3'- -CGCCGCa--CG-------GCUCGUCGCguau--CGGG- -5'
28100 3' -59.7 NC_005887.1 + 840 0.67 0.379075
Target:  5'- cGCGGcCGcgaagaaagccaaggUGCCc-GUGGaCGCGUGGCCCg -3'
miRNA:   3'- -CGCC-GC---------------ACGGcuCGUC-GCGUAUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 23389 0.67 0.375574
Target:  5'- uGCucGCGcUGCCGcuggcagccugcAGCAGCGCGUcgaucAGCUCg -3'
miRNA:   3'- -CGc-CGC-ACGGC------------UCGUCGCGUA-----UCGGG- -5'
28100 3' -59.7 NC_005887.1 + 40765 0.67 0.375574
Target:  5'- uUGGCGcGCCGcGCGcCGCcgAGCCg -3'
miRNA:   3'- cGCCGCaCGGCuCGUcGCGuaUCGGg -5'
28100 3' -59.7 NC_005887.1 + 32469 0.67 0.375574
Target:  5'- cGCGGCGUGCgGAucgaucucguuGUAGUagGCAccGCUCa -3'
miRNA:   3'- -CGCCGCACGgCU-----------CGUCG--CGUauCGGG- -5'
28100 3' -59.7 NC_005887.1 + 8225 0.67 0.372963
Target:  5'- uGUGGCGaaaucgaaauccucUGCCGAGCgcucGGCGuCAccGCUCa -3'
miRNA:   3'- -CGCCGC--------------ACGGCUCG----UCGC-GUauCGGG- -5'
28100 3' -59.7 NC_005887.1 + 23935 0.67 0.366919
Target:  5'- aGCGuCGUGCUGAcgacggcgccGCGGCGUA-GGCCa -3'
miRNA:   3'- -CGCcGCACGGCU----------CGUCGCGUaUCGGg -5'
28100 3' -59.7 NC_005887.1 + 39464 0.67 0.366919
Target:  5'- gGCcGCGUGCCuGAaaAGCGCGUGuuGCCg -3'
miRNA:   3'- -CGcCGCACGG-CUcgUCGCGUAU--CGGg -5'
28100 3' -59.7 NC_005887.1 + 14080 0.67 0.366062
Target:  5'- uCGGCGUGCCGAugauGCucgucaguggugaAGCGCc--GCUCg -3'
miRNA:   3'- cGCCGCACGGCU----CG-------------UCGCGuauCGGG- -5'
28100 3' -59.7 NC_005887.1 + 40364 0.67 0.36435
Target:  5'- cGCGGcCGUGCCGcucGUcGCGCGcgaggaaaucgugauGCCCg -3'
miRNA:   3'- -CGCC-GCACGGCu--CGuCGCGUau-------------CGGG- -5'
28100 3' -59.7 NC_005887.1 + 1094 0.67 0.358403
Target:  5'- aCGGCGccauugccgacGCCGAGCAgGUGCGUGuGCUUg -3'
miRNA:   3'- cGCCGCa----------CGGCUCGU-CGCGUAU-CGGG- -5'
28100 3' -59.7 NC_005887.1 + 15257 0.67 0.358403
Target:  5'- aCGcGCGUGUCGAacCAGCGCAgcaAGCgCg -3'
miRNA:   3'- cGC-CGCACGGCUc-GUCGCGUa--UCGgG- -5'
28100 3' -59.7 NC_005887.1 + 18588 0.67 0.355875
Target:  5'- cGCGGCGUuccagucgGCCGauuAcgguucguugcucgGCAGCGCGaucggcGGCCCg -3'
miRNA:   3'- -CGCCGCA--------CGGC---U--------------CGUCGCGUa-----UCGGG- -5'
28100 3' -59.7 NC_005887.1 + 410 0.67 0.350026
Target:  5'- cGCGaGCacGCCGGGCAGCuCAgcugcgAGCCg -3'
miRNA:   3'- -CGC-CGcaCGGCUCGUCGcGUa-----UCGGg -5'
28100 3' -59.7 NC_005887.1 + 40239 0.67 0.350026
Target:  5'- aCGGCuUGCaGuGCAGCgaauccGCAUAGUCCg -3'
miRNA:   3'- cGCCGcACGgCuCGUCG------CGUAUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 41729 0.67 0.350026
Target:  5'- gGCGGCGauCCGAuccCGGCGCGcgGGCUCu -3'
miRNA:   3'- -CGCCGCacGGCUc--GUCGCGUa-UCGGG- -5'
28100 3' -59.7 NC_005887.1 + 17252 0.67 0.350026
Target:  5'- gGCGGCGUcaauaagaucguGCCGGGCgAGaCGUcgGGCg- -3'
miRNA:   3'- -CGCCGCA------------CGGCUCG-UC-GCGuaUCGgg -5'
28100 3' -59.7 NC_005887.1 + 26054 0.67 0.341789
Target:  5'- uGUGGCauggugGUGCUccuGGuCAGCGCGUcagcGGCCCg -3'
miRNA:   3'- -CGCCG------CACGGc--UC-GUCGCGUA----UCGGG- -5'
28100 3' -59.7 NC_005887.1 + 33163 0.67 0.341789
Target:  5'- cGCGGCgGUGCuucgugcauuCGuAGCGGC-CGgacgAGCCCg -3'
miRNA:   3'- -CGCCG-CACG----------GC-UCGUCGcGUa---UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.