Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28100 | 5' | -51.1 | NC_005887.1 | + | 940 | 1.07 | 0.002532 |
Target: 5'- gGAAGAAUUCGACCUGCUCGGCAUCGUc -3' miRNA: 3'- -CUUCUUAAGCUGGACGAGCCGUAGCA- -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 1571 | 0.67 | 0.774742 |
Target: 5'- --cGAAccUCGACCgccgGCUCGGCGgcgcgCGg -3' miRNA: 3'- cuuCUUa-AGCUGGa---CGAGCCGUa----GCa -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 1807 | 0.66 | 0.861967 |
Target: 5'- cGAAGGAcgugccgcCGACCUGgUaCGGCAUCu- -3' miRNA: 3'- -CUUCUUaa------GCUGGACgA-GCCGUAGca -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 1941 | 0.67 | 0.795594 |
Target: 5'- --cGAGUUCGACCgGCacgUCGGCcgUGc -3' miRNA: 3'- cuuCUUAAGCUGGaCG---AGCCGuaGCa -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 2150 | 0.68 | 0.742267 |
Target: 5'- gGAAGAccUCGACCUgGC-CGGCggCGa -3' miRNA: 3'- -CUUCUuaAGCUGGA-CGaGCCGuaGCa -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 3987 | 0.68 | 0.716595 |
Target: 5'- cGAGGAGgcgugcuugauggcUUCGACCUGCguucCGGCG-CGc -3' miRNA: 3'- -CUUCUU--------------AAGCUGGACGa---GCCGUaGCa -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 4415 | 0.69 | 0.713206 |
Target: 5'- cGAAGGcgcggCGAuCCUgcaaugguugcagcaGCUCGGCAUCGUc -3' miRNA: 3'- -CUUCUuaa--GCU-GGA---------------CGAGCCGUAGCA- -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 6455 | 0.66 | 0.842354 |
Target: 5'- cGAAGugcgCGACCUGaaguacgggcgCGGCGUCGc -3' miRNA: 3'- -CUUCuuaaGCUGGACga---------GCCGUAGCa -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 6877 | 0.71 | 0.563329 |
Target: 5'- gGAuGAAUgUCGACCUGCucgacaacgaacgccUCGGCGUCa- -3' miRNA: 3'- -CUuCUUA-AGCUGGACG---------------AGCCGUAGca -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 8927 | 0.69 | 0.674333 |
Target: 5'- cGAGGA--UCG-UCUGCUCGGUcgCGg -3' miRNA: 3'- -CUUCUuaAGCuGGACGAGCCGuaGCa -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 10141 | 0.66 | 0.835859 |
Target: 5'- cGAAGAAgcCGGCCggagcgacgucuacgGCU-GGCAUCGg -3' miRNA: 3'- -CUUCUUaaGCUGGa--------------CGAgCCGUAGCa -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 11697 | 0.69 | 0.708676 |
Target: 5'- uGAAGAAgUCGAC--GCUCGaGCGUCGc -3' miRNA: 3'- -CUUCUUaAGCUGgaCGAGC-CGUAGCa -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 11772 | 0.66 | 0.861967 |
Target: 5'- -uGGGAUcUCGGCggcguccucgCUGCUCGGCggCGUc -3' miRNA: 3'- cuUCUUA-AGCUG----------GACGAGCCGuaGCA- -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 15598 | 0.66 | 0.844188 |
Target: 5'- cGAcuGGUUCGACCUGgaCGaGCcgAUCGUg -3' miRNA: 3'- -CUucUUAAGCUGGACgaGC-CG--UAGCA- -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 16384 | 0.71 | 0.581676 |
Target: 5'- cGAAGug-UCGAagaUGCUCGGCGUCu- -3' miRNA: 3'- -CUUCuuaAGCUgg-ACGAGCCGUAGca -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 17461 | 0.68 | 0.764063 |
Target: 5'- cGAAGAa---GACCgaGCgcgCGGCAUCGg -3' miRNA: 3'- -CUUCUuaagCUGGa-CGa--GCCGUAGCa -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 17966 | 0.75 | 0.370936 |
Target: 5'- aAAGAAUugaUCGACCUGCagcgCGGC-UCGUg -3' miRNA: 3'- cUUCUUA---AGCUGGACGa---GCCGuAGCA- -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 26980 | 0.79 | 0.206616 |
Target: 5'- --cGGcgUCGACCUGCUCGgGCGUCa- -3' miRNA: 3'- cuuCUuaAGCUGGACGAGC-CGUAGca -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 28044 | 0.67 | 0.815687 |
Target: 5'- --cGGcgUCGGCCUGCgcuugCGGguUCa- -3' miRNA: 3'- cuuCUuaAGCUGGACGa----GCCguAGca -5' |
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28100 | 5' | -51.1 | NC_005887.1 | + | 28791 | 0.68 | 0.731176 |
Target: 5'- ------gUCGGCCUGCUCGggcggcagcGCAUCGc -3' miRNA: 3'- cuucuuaAGCUGGACGAGC---------CGUAGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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