miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28101 3' -56.1 NC_005887.1 + 30616 0.67 0.581378
Target:  5'- aCuCGCG-CAGCGCgucCGgcaGAUCCGGa -3'
miRNA:   3'- gGuGCGCuGUCGCGa--GCag-CUAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 15940 0.67 0.574839
Target:  5'- cCCGCGCGGCcGCcaGCUCGaccagaaccgcagaCGAUCCGc -3'
miRNA:   3'- -GGUGCGCUGuCG--CGAGCa-------------GCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 6813 0.67 0.570488
Target:  5'- gCUGCGCGACuGGCGCUaCGUgGcgCgGGu -3'
miRNA:   3'- -GGUGCGCUG-UCGCGA-GCAgCuaGgUC- -5'
28101 3' -56.1 NC_005887.1 + 28848 0.67 0.548867
Target:  5'- gCC-CGUGcCGGCGacCUCGUCGAUCUu- -3'
miRNA:   3'- -GGuGCGCuGUCGC--GAGCAGCUAGGuc -5'
28101 3' -56.1 NC_005887.1 + 28356 0.67 0.548867
Target:  5'- -gGCGCG-CGGCGCauucuUCGUCGGgaacgUCAGg -3'
miRNA:   3'- ggUGCGCuGUCGCG-----AGCAGCUa----GGUC- -5'
28101 3' -56.1 NC_005887.1 + 39815 0.67 0.548867
Target:  5'- gCCGCcCGACAGCGCcuugcgcagCGUgCGGcagUCCGGg -3'
miRNA:   3'- -GGUGcGCUGUCGCGa--------GCA-GCU---AGGUC- -5'
28101 3' -56.1 NC_005887.1 + 29606 0.67 0.548867
Target:  5'- cUCGCGUuGCAGCGCggCG-CGAUCgAGc -3'
miRNA:   3'- -GGUGCGcUGUCGCGa-GCaGCUAGgUC- -5'
28101 3' -56.1 NC_005887.1 + 16457 0.67 0.538152
Target:  5'- gCGCGCgGGCAuGCGCUCGaCcgcgcggcagGAUCCGGc -3'
miRNA:   3'- gGUGCG-CUGU-CGCGAGCaG----------CUAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 15403 0.67 0.537084
Target:  5'- gCGCGCgGGCAGCGgaUCGUCGAcgacgcauacgugUUCGGu -3'
miRNA:   3'- gGUGCG-CUGUCGCg-AGCAGCU-------------AGGUC- -5'
28101 3' -56.1 NC_005887.1 + 12826 0.67 0.534951
Target:  5'- gCGCGCGACGugcuguucuacaacGCGCccgcCGUCGAggccgCCGGc -3'
miRNA:   3'- gGUGCGCUGU--------------CGCGa---GCAGCUa----GGUC- -5'
28101 3' -56.1 NC_005887.1 + 880 0.67 0.534951
Target:  5'- cCCGCGCcgccggacgagucaGGCGGC-CUCGgcuUCGAUCCGc -3'
miRNA:   3'- -GGUGCG--------------CUGUCGcGAGC---AGCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 4860 0.68 0.527508
Target:  5'- cCCcCGUG-CAGCGCaCGaUCGAUCCGc -3'
miRNA:   3'- -GGuGCGCuGUCGCGaGC-AGCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 26130 0.68 0.527508
Target:  5'- aCgGCGCGcuucguuucGCGGCGCucgacgacguccUCGUCGAUCguGu -3'
miRNA:   3'- -GgUGCGC---------UGUCGCG------------AGCAGCUAGguC- -5'
28101 3' -56.1 NC_005887.1 + 2452 0.68 0.527508
Target:  5'- gCUGCGCuACGGCGC-CGUCGA-CgAGg -3'
miRNA:   3'- -GGUGCGcUGUCGCGaGCAGCUaGgUC- -5'
28101 3' -56.1 NC_005887.1 + 35718 0.68 0.527508
Target:  5'- uCCACGCGu--GCaGCUCGgucgCGGUCguGg -3'
miRNA:   3'- -GGUGCGCuguCG-CGAGCa---GCUAGguC- -5'
28101 3' -56.1 NC_005887.1 + 11552 0.68 0.527508
Target:  5'- uCgGCGCG-CAGCGCgCGgCGGUCgCGGa -3'
miRNA:   3'- -GgUGCGCuGUCGCGaGCaGCUAG-GUC- -5'
28101 3' -56.1 NC_005887.1 + 39885 0.68 0.516945
Target:  5'- aUC-CGCGuCAGCGcCUCGUCGAcggcgCCGu -3'
miRNA:   3'- -GGuGCGCuGUCGC-GAGCAGCUa----GGUc -5'
28101 3' -56.1 NC_005887.1 + 3944 0.68 0.516945
Target:  5'- uCCGCgGCGcGCAGaaGCUCGUCGAcCCGc -3'
miRNA:   3'- -GGUG-CGC-UGUCg-CGAGCAGCUaGGUc -5'
28101 3' -56.1 NC_005887.1 + 27347 0.68 0.516945
Target:  5'- gCCACGCGcaGCGGCGCgcagacgagcgUCGgcaucgucUCGAUCCc- -3'
miRNA:   3'- -GGUGCGC--UGUCGCG-----------AGC--------AGCUAGGuc -5'
28101 3' -56.1 NC_005887.1 + 24758 0.68 0.513792
Target:  5'- gCGCGCGAgCGcgggauugacgggcGUGUUCGUCGcgCCGGu -3'
miRNA:   3'- gGUGCGCU-GU--------------CGCGAGCAGCuaGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.