miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 3' -47.9 NC_005887.1 + 7447 0.68 0.923407
Target:  5'- uGGCGUGCGCG---UCGU----GAUCGg -3'
miRNA:   3'- -UCGCGCGCGCuuaAGCGuuauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 40925 0.68 0.923407
Target:  5'- cGCGCGCGCaccGAGUUCGgCAAc------ -3'
miRNA:   3'- uCGCGCGCG---CUUAAGC-GUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 6293 0.69 0.871437
Target:  5'- cGGCGUGCGCGAg--CGC-----GUCGa -3'
miRNA:   3'- -UCGCGCGCGCUuaaGCGuuauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 13631 0.69 0.871437
Target:  5'- uAGCGCGCGCGug-UCGU------UCGa -3'
miRNA:   3'- -UCGCGCGCGCuuaAGCGuuauuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 27929 0.69 0.869735
Target:  5'- uGCGCGCGuCGggUcCGCuugaacguGUCGg -3'
miRNA:   3'- uCGCGCGC-GCuuAaGCGuuauu---UAGC- -5'
28102 3' -47.9 NC_005887.1 + 20784 0.69 0.853912
Target:  5'- cGUG-GCGCaAAUUCGCAGUuugGAAUCGc -3'
miRNA:   3'- uCGCgCGCGcUUAAGCGUUA---UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 40690 0.69 0.853912
Target:  5'- uGGCGCGCGCGcacggcUgGCAGgagccGAUCGa -3'
miRNA:   3'- -UCGCGCGCGCuua---AgCGUUau---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 11735 0.69 0.871437
Target:  5'- cGGCGCGCaCGAAUgcaCGCAAcagcauGAUCa -3'
miRNA:   3'- -UCGCGCGcGCUUAa--GCGUUau----UUAGc -5'
28102 3' -47.9 NC_005887.1 + 41821 0.69 0.862813
Target:  5'- cGGCGCGCgGCGGccgaCGCGuucAGAUCGa -3'
miRNA:   3'- -UCGCGCG-CGCUuaa-GCGUua-UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 27429 0.7 0.815729
Target:  5'- cGGCGUGCGuCGA--UCGCGAguGAUUGc -3'
miRNA:   3'- -UCGCGCGC-GCUuaAGCGUUauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 33474 0.7 0.815729
Target:  5'- gAGCGCGUaCGGcgUCGCGAUc--UCGa -3'
miRNA:   3'- -UCGCGCGcGCUuaAGCGUUAuuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 15281 0.7 0.815729
Target:  5'- aAGCGCgGCacCGAGUUCGUGAagAAGUCGg -3'
miRNA:   3'- -UCGCG-CGc-GCUUAAGCGUUa-UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 13667 0.7 0.805596
Target:  5'- cGCGgGCGUGA--UCGCGGguuGUCGu -3'
miRNA:   3'- uCGCgCGCGCUuaAGCGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 34268 0.7 0.844742
Target:  5'- uGCGCGCGCGcuUUCGUGAa------ -3'
miRNA:   3'- uCGCGCGCGCuuAAGCGUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 2263 0.7 0.844742
Target:  5'- gGGCGCGCGUaAGUUCG----GGAUCGa -3'
miRNA:   3'- -UCGCGCGCGcUUAAGCguuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 13167 0.7 0.844742
Target:  5'- cGCGCGCGCGcagacagCGgGAgcGGUCGa -3'
miRNA:   3'- uCGCGCGCGCuuaa---GCgUUauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 9393 0.71 0.795254
Target:  5'- cGCGcCGCGCGAgaacguAUUCGCGc--GGUCGu -3'
miRNA:   3'- uCGC-GCGCGCU------UAAGCGUuauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 42253 0.71 0.7631
Target:  5'- cGCGgGCGUGGAUUUGCAG-GAAUUu -3'
miRNA:   3'- uCGCgCGCGCUUAAGCGUUaUUUAGc -5'
28102 3' -47.9 NC_005887.1 + 14719 0.71 0.773992
Target:  5'- gGGCGCG-GCGAucgCGCAGgcgacGAUCGa -3'
miRNA:   3'- -UCGCGCgCGCUuaaGCGUUau---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 28236 0.71 0.773992
Target:  5'- cAGCGCGCGCagcUUCGCGAg----CGg -3'
miRNA:   3'- -UCGCGCGCGcuuAAGCGUUauuuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.