Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28102 | 3' | -47.9 | NC_005887.1 | + | 27970 | 0.67 | 0.946172 |
Target: 5'- cGCGCGCGCGccga-GCGGcGAcUCGa -3' miRNA: 3'- uCGCGCGCGCuuaagCGUUaUUuAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 28236 | 0.71 | 0.773992 |
Target: 5'- cAGCGCGCGCagcUUCGCGAg----CGg -3' miRNA: 3'- -UCGCGCGCGcuuAAGCGUUauuuaGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 29198 | 0.68 | 0.910113 |
Target: 5'- cGCGCGCGCGGcaa-GCGAcGAGaCGa -3' miRNA: 3'- uCGCGCGCGCUuaagCGUUaUUUaGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 29659 | 0.73 | 0.647978 |
Target: 5'- uGCGCGCGUGAcccugcaaCGCGAUAAgcuucGUCGg -3' miRNA: 3'- uCGCGCGCGCUuaa-----GCGUUAUU-----UAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 29935 | 0.68 | 0.910113 |
Target: 5'- cGCGCGCGCGGugUCGUugcccugcuGGUAcuGGUUGa -3' miRNA: 3'- uCGCGCGCGCUuaAGCG---------UUAU--UUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 30367 | 0.66 | 0.967669 |
Target: 5'- cGUGgGCGCGAccugccGUUCGUAGacagGGAUCc -3' miRNA: 3'- uCGCgCGCGCU------UAAGCGUUa---UUUAGc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 30641 | 0.68 | 0.916919 |
Target: 5'- uGCGCGCgGCGAAgcgaucUUGCGAcgccuGAUCGu -3' miRNA: 3'- uCGCGCG-CGCUUa-----AGCGUUau---UUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 30775 | 0.67 | 0.929576 |
Target: 5'- uGCGCGCgGCGAGUUCcuucuGCGcgcGAUCa -3' miRNA: 3'- uCGCGCG-CGCUUAAG-----CGUuauUUAGc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 31511 | 0.76 | 0.497073 |
Target: 5'- cGCGCgGCGCGGAUgaaCGCAGUu-GUCGc -3' miRNA: 3'- uCGCG-CGCGCUUAa--GCGUUAuuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 33427 | 0.68 | 0.916919 |
Target: 5'- uGCGuCGCGCGGA-UCGCGAa------ -3' miRNA: 3'- uCGC-GCGCGCUUaAGCGUUauuuagc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 33474 | 0.7 | 0.815729 |
Target: 5'- gAGCGCGUaCGGcgUCGCGAUc--UCGa -3' miRNA: 3'- -UCGCGCGcGCUuaAGCGUUAuuuAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 34268 | 0.7 | 0.844742 |
Target: 5'- uGCGCGCGCGcuUUCGUGAa------ -3' miRNA: 3'- uCGCGCGCGCuuAAGCGUUauuuagc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 34944 | 0.66 | 0.967669 |
Target: 5'- cGGCGgGUGCGAccgUgGCGAUcgucGUCGg -3' miRNA: 3'- -UCGCgCGCGCUua-AgCGUUAuu--UAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 35076 | 0.68 | 0.895557 |
Target: 5'- cGGCGgGCGCGAcUUCG----AAGUCGu -3' miRNA: 3'- -UCGCgCGCGCUuAAGCguuaUUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 35153 | 0.66 | 0.959962 |
Target: 5'- uGCGCaCGCGAgaAUUCGagaAGcGAGUCGa -3' miRNA: 3'- uCGCGcGCGCU--UAAGCg--UUaUUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 35677 | 0.68 | 0.922135 |
Target: 5'- cAGCaGCGCGCGAucggcggccggcUUCGCGGUuuccgAGAUCc -3' miRNA: 3'- -UCG-CGCGCGCUu-----------AAGCGUUA-----UUUAGc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 36277 | 0.66 | 0.959962 |
Target: 5'- cAGCGCGCGCaucUUCGUuGGUGAGUg- -3' miRNA: 3'- -UCGCGCGCGcuuAAGCG-UUAUUUAgc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 36919 | 0.71 | 0.784714 |
Target: 5'- cAGCGgGCGCGuggUCGCGcc-GGUCGc -3' miRNA: 3'- -UCGCgCGCGCuuaAGCGUuauUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 37113 | 0.67 | 0.940957 |
Target: 5'- cGGCGauCGCGCGGccgUCGCccgGAAUCu -3' miRNA: 3'- -UCGC--GCGCGCUua-AGCGuuaUUUAGc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 37400 | 0.67 | 0.951075 |
Target: 5'- uGGCGCuGCGCGG--UCGCGAc------ -3' miRNA: 3'- -UCGCG-CGCGCUuaAGCGUUauuuagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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