miRNA display CGI


Results 61 - 74 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 3' -47.9 NC_005887.1 + 37449 0.66 0.959962
Target:  5'- cGGCGCuugccuGCGCGG-UUUGCAGUGcgccggaugcGAUCa -3'
miRNA:   3'- -UCGCG------CGCGCUuAAGCGUUAU----------UUAGc -5'
28102 3' -47.9 NC_005887.1 + 38152 0.66 0.958706
Target:  5'- uGCGCGCGCugcagcacuucggUCGCGGUcauGUCGc -3'
miRNA:   3'- uCGCGCGCGcuua---------AGCGUUAuu-UAGC- -5'
28102 3' -47.9 NC_005887.1 + 38419 0.66 0.95567
Target:  5'- uGCGCGcCGCGGAUguuggucuUCGCcAU--GUCGu -3'
miRNA:   3'- uCGCGC-GCGCUUA--------AGCGuUAuuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 38648 0.66 0.95567
Target:  5'- cGGCGCGCGgcuCGAcggCGUggUAgaaGAUCGc -3'
miRNA:   3'- -UCGCGCGC---GCUuaaGCGuuAU---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 39106 0.78 0.422334
Target:  5'- uGCGCaGCGCGAGcggCGCGGUcGAAUCGa -3'
miRNA:   3'- uCGCG-CGCGCUUaa-GCGUUA-UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 40379 0.67 0.946173
Target:  5'- cGuCGCGCGCGAGgaaaUCGUGAUGcc-CGg -3'
miRNA:   3'- uC-GCGCGCGCUUa---AGCGUUAUuuaGC- -5'
28102 3' -47.9 NC_005887.1 + 40495 0.67 0.929576
Target:  5'- aGGCGUgGCGCGAcgUCGUGu----UCGg -3'
miRNA:   3'- -UCGCG-CGCGCUuaAGCGUuauuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 40690 0.69 0.853912
Target:  5'- uGGCGCGCGCGcacggcUgGCAGgagccGAUCGa -3'
miRNA:   3'- -UCGCGCGCGCuua---AgCGUUau---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 40864 0.68 0.910113
Target:  5'- cGCGcCGCGCGAGcgcCGCAcgccGUCGg -3'
miRNA:   3'- uCGC-GCGCGCUUaa-GCGUuauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 40925 0.68 0.923407
Target:  5'- cGCGCGCGCaccGAGUUCGgCAAc------ -3'
miRNA:   3'- uCGCGCGCG---CUUAAGC-GUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 41821 0.69 0.862813
Target:  5'- cGGCGCGCgGCGGccgaCGCGuucAGAUCGa -3'
miRNA:   3'- -UCGCGCG-CGCUuaa-GCGUua-UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 41945 0.67 0.929576
Target:  5'- cGGCGCgGCGCGucUUCGCGGc------ -3'
miRNA:   3'- -UCGCG-CGCGCuuAAGCGUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 42210 0.68 0.916919
Target:  5'- uGCuGCGCGCGGuuuUUCGCAGauUAAGa-- -3'
miRNA:   3'- uCG-CGCGCGCUu--AAGCGUU--AUUUagc -5'
28102 3' -47.9 NC_005887.1 + 42253 0.71 0.7631
Target:  5'- cGCGgGCGUGGAUUUGCAG-GAAUUu -3'
miRNA:   3'- uCGCgCGCGCUUAAGCGUUaUUUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.