miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 3' -47.9 NC_005887.1 + 35076 0.68 0.895557
Target:  5'- cGGCGgGCGCGAcUUCG----AAGUCGu -3'
miRNA:   3'- -UCGCgCGCGCUuAAGCguuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 34944 0.66 0.967669
Target:  5'- cGGCGgGUGCGAccgUgGCGAUcgucGUCGg -3'
miRNA:   3'- -UCGCgCGCGCUua-AgCGUUAuu--UAGC- -5'
28102 3' -47.9 NC_005887.1 + 34268 0.7 0.844742
Target:  5'- uGCGCGCGCGcuUUCGUGAa------ -3'
miRNA:   3'- uCGCGCGCGCuuAAGCGUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 33474 0.7 0.815729
Target:  5'- gAGCGCGUaCGGcgUCGCGAUc--UCGa -3'
miRNA:   3'- -UCGCGCGcGCUuaAGCGUUAuuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 33427 0.68 0.916919
Target:  5'- uGCGuCGCGCGGA-UCGCGAa------ -3'
miRNA:   3'- uCGC-GCGCGCUUaAGCGUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 31511 0.76 0.497073
Target:  5'- cGCGCgGCGCGGAUgaaCGCAGUu-GUCGc -3'
miRNA:   3'- uCGCG-CGCGCUUAa--GCGUUAuuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 30775 0.67 0.929576
Target:  5'- uGCGCGCgGCGAGUUCcuucuGCGcgcGAUCa -3'
miRNA:   3'- uCGCGCG-CGCUUAAG-----CGUuauUUAGc -5'
28102 3' -47.9 NC_005887.1 + 30641 0.68 0.916919
Target:  5'- uGCGCGCgGCGAAgcgaucUUGCGAcgccuGAUCGu -3'
miRNA:   3'- uCGCGCG-CGCUUa-----AGCGUUau---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 30367 0.66 0.967669
Target:  5'- cGUGgGCGCGAccugccGUUCGUAGacagGGAUCc -3'
miRNA:   3'- uCGCgCGCGCU------UAAGCGUUa---UUUAGc -5'
28102 3' -47.9 NC_005887.1 + 29935 0.68 0.910113
Target:  5'- cGCGCGCGCGGugUCGUugcccugcuGGUAcuGGUUGa -3'
miRNA:   3'- uCGCGCGCGCUuaAGCG---------UUAU--UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 29659 0.73 0.647978
Target:  5'- uGCGCGCGUGAcccugcaaCGCGAUAAgcuucGUCGg -3'
miRNA:   3'- uCGCGCGCGCUuaa-----GCGUUAUU-----UAGC- -5'
28102 3' -47.9 NC_005887.1 + 29198 0.68 0.910113
Target:  5'- cGCGCGCGCGGcaa-GCGAcGAGaCGa -3'
miRNA:   3'- uCGCGCGCGCUuaagCGUUaUUUaGC- -5'
28102 3' -47.9 NC_005887.1 + 28236 0.71 0.773992
Target:  5'- cAGCGCGCGCagcUUCGCGAg----CGg -3'
miRNA:   3'- -UCGCGCGCGcuuAAGCGUUauuuaGC- -5'
28102 3' -47.9 NC_005887.1 + 27970 0.67 0.946172
Target:  5'- cGCGCGCGCGccga-GCGGcGAcUCGa -3'
miRNA:   3'- uCGCGCGCGCuuaagCGUUaUUuAGC- -5'
28102 3' -47.9 NC_005887.1 + 27929 0.69 0.869735
Target:  5'- uGCGCGCGuCGggUcCGCuugaacguGUCGg -3'
miRNA:   3'- uCGCGCGC-GCuuAaGCGuuauu---UAGC- -5'
28102 3' -47.9 NC_005887.1 + 27429 0.7 0.815729
Target:  5'- cGGCGUGCGuCGA--UCGCGAguGAUUGc -3'
miRNA:   3'- -UCGCGCGC-GCUuaAGCGUUauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 26964 0.68 0.910113
Target:  5'- -cCGCGCGCGAucagCGCGGc--GUCGa -3'
miRNA:   3'- ucGCGCGCGCUuaa-GCGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 26805 0.67 0.951075
Target:  5'- cGCGCGCGCcGAGUcgUCGCccGUGA--CGa -3'
miRNA:   3'- uCGCGCGCG-CUUA--AGCGu-UAUUuaGC- -5'
28102 3' -47.9 NC_005887.1 + 26435 0.66 0.963959
Target:  5'- cGGCcCGCGCGGAa-CGCAG---GUCGg -3'
miRNA:   3'- -UCGcGCGCGCUUaaGCGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 24895 0.67 0.940957
Target:  5'- cGCGCGCuCGGucuucUUCGCAGcagccGGAUCGg -3'
miRNA:   3'- uCGCGCGcGCUu----AAGCGUUa----UUUAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.