miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 3' -47.9 NC_005887.1 + 23679 0.8 0.31972
Target:  5'- cGGCGCGCGCGAA--CGCAucgAAAUUGu -3'
miRNA:   3'- -UCGCGCGCGCUUaaGCGUua-UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 20784 0.69 0.853912
Target:  5'- cGUG-GCGCaAAUUCGCAGUuugGAAUCGc -3'
miRNA:   3'- uCGCgCGCGcUUAAGCGUUA---UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 16769 0.67 0.935426
Target:  5'- gGGCGCGauCGA---CGCGAUGAagGUCGg -3'
miRNA:   3'- -UCGCGCgcGCUuaaGCGUUAUU--UAGC- -5'
28102 3' -47.9 NC_005887.1 + 16157 0.79 0.345754
Target:  5'- cGGCGCGC-CGAGUgCGCGAgcGAUCGa -3'
miRNA:   3'- -UCGCGCGcGCUUAaGCGUUauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 15770 0.67 0.935426
Target:  5'- aGGcCGCGgcCGCGAAggCGCAGaagcAGAUCGa -3'
miRNA:   3'- -UC-GCGC--GCGCUUaaGCGUUa---UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 15560 0.81 0.279655
Target:  5'- cGGCGCGCGCGAccgcgcucgAUUCGCu---GAUCGc -3'
miRNA:   3'- -UCGCGCGCGCU---------UAAGCGuuauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 15316 0.68 0.902991
Target:  5'- cAGCGUGCGCGG--UCGCGcgc--UCGc -3'
miRNA:   3'- -UCGCGCGCGCUuaAGCGUuauuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 15281 0.7 0.815729
Target:  5'- aAGCGCgGCacCGAGUUCGUGAagAAGUCGg -3'
miRNA:   3'- -UCGCG-CGc-GCUUAAGCGUUa-UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 14719 0.71 0.773992
Target:  5'- gGGCGCG-GCGAucgCGCAGgcgacGAUCGa -3'
miRNA:   3'- -UCGCGCgCGCUuaaGCGUUau---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 13823 0.67 0.946172
Target:  5'- cGGCGCGCGUGAGcgUGCc-UGAccgcAUCGu -3'
miRNA:   3'- -UCGCGCGCGCUUaaGCGuuAUU----UAGC- -5'
28102 3' -47.9 NC_005887.1 + 13667 0.7 0.805596
Target:  5'- cGCGgGCGUGA--UCGCGGguuGUCGu -3'
miRNA:   3'- uCGCgCGCGCUuaAGCGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 13631 0.69 0.871437
Target:  5'- uAGCGCGCGCGug-UCGU------UCGa -3'
miRNA:   3'- -UCGCGCGCGCuuaAGCGuuauuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 13445 0.74 0.636151
Target:  5'- gGGCGCGCGCauccAAUUCGUAGcc-GUCGa -3'
miRNA:   3'- -UCGCGCGCGc---UUAAGCGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 13167 0.7 0.844742
Target:  5'- cGCGCGCGCGcagacagCGgGAgcGGUCGa -3'
miRNA:   3'- uCGCGCGCGCuuaa---GCgUUauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 12432 0.85 0.158366
Target:  5'- cGGCGCGCGCGA--UCGCGAUGGAccCGa -3'
miRNA:   3'- -UCGCGCGCGCUuaAGCGUUAUUUa-GC- -5'
28102 3' -47.9 NC_005887.1 + 11746 0.75 0.577193
Target:  5'- cGCGCuGCGCGAGUugcUCGCGAUccGGcUCGa -3'
miRNA:   3'- uCGCG-CGCGCUUA---AGCGUUA--UUuAGC- -5'
28102 3' -47.9 NC_005887.1 + 11735 0.69 0.871437
Target:  5'- cGGCGCGCaCGAAUgcaCGCAAcagcauGAUCa -3'
miRNA:   3'- -UCGCGCGcGCUUAa--GCGUUau----UUAGc -5'
28102 3' -47.9 NC_005887.1 + 11560 0.76 0.497073
Target:  5'- cAGCGCGCgGCGG--UCGCG--GAAUCGg -3'
miRNA:   3'- -UCGCGCG-CGCUuaAGCGUuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 11112 0.66 0.963183
Target:  5'- uGGUGCGCGCGAAgcuggccgaggCGCcGUGg--CGg -3'
miRNA:   3'- -UCGCGCGCGCUUaa---------GCGuUAUuuaGC- -5'
28102 3' -47.9 NC_005887.1 + 9393 0.71 0.795254
Target:  5'- cGCGcCGCGCGAgaacguAUUCGCGc--GGUCGu -3'
miRNA:   3'- uCGC-GCGCGCU------UAAGCGUuauUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.