Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28102 | 3' | -47.9 | NC_005887.1 | + | 15316 | 0.68 | 0.902991 |
Target: 5'- cAGCGUGCGCGG--UCGCGcgc--UCGc -3' miRNA: 3'- -UCGCGCGCGCUuaAGCGUuauuuAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 6293 | 0.69 | 0.871437 |
Target: 5'- cGGCGUGCGCGAg--CGC-----GUCGa -3' miRNA: 3'- -UCGCGCGCGCUuaaGCGuuauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 13631 | 0.69 | 0.871437 |
Target: 5'- uAGCGCGCGCGug-UCGU------UCGa -3' miRNA: 3'- -UCGCGCGCGCuuaAGCGuuauuuAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 27929 | 0.69 | 0.869735 |
Target: 5'- uGCGCGCGuCGggUcCGCuugaacguGUCGg -3' miRNA: 3'- uCGCGCGC-GCuuAaGCGuuauu---UAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 41821 | 0.69 | 0.862813 |
Target: 5'- cGGCGCGCgGCGGccgaCGCGuucAGAUCGa -3' miRNA: 3'- -UCGCGCG-CGCUuaa-GCGUua-UUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 34268 | 0.7 | 0.844742 |
Target: 5'- uGCGCGCGCGcuUUCGUGAa------ -3' miRNA: 3'- uCGCGCGCGCuuAAGCGUUauuuagc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 33427 | 0.68 | 0.916919 |
Target: 5'- uGCGuCGCGCGGA-UCGCGAa------ -3' miRNA: 3'- uCGC-GCGCGCUUaAGCGUUauuuagc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 41945 | 0.67 | 0.929576 |
Target: 5'- cGGCGCgGCGCGucUUCGCGGc------ -3' miRNA: 3'- -UCGCG-CGCGCuuAAGCGUUauuuagc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 1673 | 0.67 | 0.933705 |
Target: 5'- uGCGCGCGCGccaggUGCAGgauggugcggccgguGAUCGg -3' miRNA: 3'- uCGCGCGCGCuuaa-GCGUUau-------------UUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 30367 | 0.66 | 0.967669 |
Target: 5'- cGUGgGCGCGAccugccGUUCGUAGacagGGAUCc -3' miRNA: 3'- uCGCgCGCGCU------UAAGCGUUa---UUUAGc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 26435 | 0.66 | 0.963959 |
Target: 5'- cGGCcCGCGCGGAa-CGCAG---GUCGg -3' miRNA: 3'- -UCGcGCGCGCUUaaGCGUUauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 35153 | 0.66 | 0.959962 |
Target: 5'- uGCGCaCGCGAgaAUUCGagaAGcGAGUCGa -3' miRNA: 3'- uCGCGcGCGCU--UAAGCg--UUaUUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 36277 | 0.66 | 0.959962 |
Target: 5'- cAGCGCGCGCaucUUCGUuGGUGAGUg- -3' miRNA: 3'- -UCGCGCGCGcuuAAGCG-UUAUUUAgc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 38152 | 0.66 | 0.958706 |
Target: 5'- uGCGCGCGCugcagcacuucggUCGCGGUcauGUCGc -3' miRNA: 3'- uCGCGCGCGcuua---------AGCGUUAuu-UAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 38419 | 0.66 | 0.95567 |
Target: 5'- uGCGCGcCGCGGAUguuggucuUCGCcAU--GUCGu -3' miRNA: 3'- uCGCGC-GCGCUUA--------AGCGuUAuuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 38648 | 0.66 | 0.95567 |
Target: 5'- cGGCGCGCGgcuCGAcggCGUggUAgaaGAUCGc -3' miRNA: 3'- -UCGCGCGC---GCUuaaGCGuuAU---UUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 26805 | 0.67 | 0.951075 |
Target: 5'- cGCGCGCGCcGAGUcgUCGCccGUGA--CGa -3' miRNA: 3'- uCGCGCGCG-CUUA--AGCGu-UAUUuaGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 1440 | 0.67 | 0.951075 |
Target: 5'- uGCGCGCGCGGuagcccUUCgGCGGcucGUCGu -3' miRNA: 3'- uCGCGCGCGCUu-----AAG-CGUUauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 27970 | 0.67 | 0.946172 |
Target: 5'- cGCGCGCGCGccga-GCGGcGAcUCGa -3' miRNA: 3'- uCGCGCGCGCuuaagCGUUaUUuAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 13823 | 0.67 | 0.946172 |
Target: 5'- cGGCGCGCGUGAGcgUGCc-UGAccgcAUCGu -3' miRNA: 3'- -UCGCGCGCGCUUaaGCGuuAUU----UAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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