Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28102 | 3' | -47.9 | NC_005887.1 | + | 15770 | 0.67 | 0.935426 |
Target: 5'- aGGcCGCGgcCGCGAAggCGCAGaagcAGAUCGa -3' miRNA: 3'- -UC-GCGC--GCGCUUaaGCGUUa---UUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 318 | 0.67 | 0.935426 |
Target: 5'- cGGUGCGCGCGuacaccgaggaAGUgCGCGAgccGUCGc -3' miRNA: 3'- -UCGCGCGCGC-----------UUAaGCGUUauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 16769 | 0.67 | 0.935426 |
Target: 5'- gGGCGCGauCGA---CGCGAUGAagGUCGg -3' miRNA: 3'- -UCGCGCgcGCUuaaGCGUUAUU--UAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 1673 | 0.67 | 0.933705 |
Target: 5'- uGCGCGCGCGccaggUGCAGgauggugcggccgguGAUCGg -3' miRNA: 3'- uCGCGCGCGCuuaa-GCGUUau-------------UUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 40495 | 0.67 | 0.929576 |
Target: 5'- aGGCGUgGCGCGAcgUCGUGu----UCGg -3' miRNA: 3'- -UCGCG-CGCGCUuaAGCGUuauuuAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 41945 | 0.67 | 0.929576 |
Target: 5'- cGGCGCgGCGCGucUUCGCGGc------ -3' miRNA: 3'- -UCGCG-CGCGCuuAAGCGUUauuuagc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 30775 | 0.67 | 0.929576 |
Target: 5'- uGCGCGCgGCGAGUUCcuucuGCGcgcGAUCa -3' miRNA: 3'- uCGCGCG-CGCUUAAG-----CGUuauUUAGc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 40925 | 0.68 | 0.923407 |
Target: 5'- cGCGCGCGCaccGAGUUCGgCAAc------ -3' miRNA: 3'- uCGCGCGCG---CUUAAGC-GUUauuuagc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 7447 | 0.68 | 0.923407 |
Target: 5'- uGGCGUGCGCG---UCGU----GAUCGg -3' miRNA: 3'- -UCGCGCGCGCuuaAGCGuuauUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 4405 | 0.68 | 0.923407 |
Target: 5'- uGCGCGCcgGCGAAggCGCGGc-GAUCc -3' miRNA: 3'- uCGCGCG--CGCUUaaGCGUUauUUAGc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 35677 | 0.68 | 0.922135 |
Target: 5'- cAGCaGCGCGCGAucggcggccggcUUCGCGGUuuccgAGAUCc -3' miRNA: 3'- -UCG-CGCGCGCUu-----------AAGCGUUA-----UUUAGc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 30641 | 0.68 | 0.916919 |
Target: 5'- uGCGCGCgGCGAAgcgaucUUGCGAcgccuGAUCGu -3' miRNA: 3'- uCGCGCG-CGCUUa-----AGCGUUau---UUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 33427 | 0.68 | 0.916919 |
Target: 5'- uGCGuCGCGCGGA-UCGCGAa------ -3' miRNA: 3'- uCGC-GCGCGCUUaAGCGUUauuuagc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 42210 | 0.68 | 0.916919 |
Target: 5'- uGCuGCGCGCGGuuuUUCGCAGauUAAGa-- -3' miRNA: 3'- uCG-CGCGCGCUu--AAGCGUU--AUUUagc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 40864 | 0.68 | 0.910113 |
Target: 5'- cGCGcCGCGCGAGcgcCGCAcgccGUCGg -3' miRNA: 3'- uCGC-GCGCGCUUaa-GCGUuauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 6475 | 0.68 | 0.910113 |
Target: 5'- -aCGgGCGCGGcgUCGCGGU--GUCu -3' miRNA: 3'- ucGCgCGCGCUuaAGCGUUAuuUAGc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 29198 | 0.68 | 0.910113 |
Target: 5'- cGCGCGCGCGGcaa-GCGAcGAGaCGa -3' miRNA: 3'- uCGCGCGCGCUuaagCGUUaUUUaGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 26964 | 0.68 | 0.910113 |
Target: 5'- -cCGCGCGCGAucagCGCGGc--GUCGa -3' miRNA: 3'- ucGCGCGCGCUuaa-GCGUUauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 29935 | 0.68 | 0.910113 |
Target: 5'- cGCGCGCGCGGugUCGUugcccugcuGGUAcuGGUUGa -3' miRNA: 3'- uCGCGCGCGCUuaAGCG---------UUAU--UUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 8094 | 0.68 | 0.902991 |
Target: 5'- aAGCGCGCGCGcAGcUCGCcgcgc-UCGc -3' miRNA: 3'- -UCGCGCGCGC-UUaAGCGuuauuuAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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