miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 5' -58.5 NC_005887.1 + 11326 0.68 0.329575
Target:  5'- gCCGCgGC-CUGCGAAUaguggccugcGcCGCGCCAc -3'
miRNA:   3'- gGGCGaCGaGACGCUUA----------C-GCGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 10729 0.69 0.319265
Target:  5'- gCCGCUGUUCgaugGCGAcauggaaucggacugGCGCGgCGGg -3'
miRNA:   3'- gGGCGACGAGa---CGCUua-------------CGCGCgGUC- -5'
28102 5' -58.5 NC_005887.1 + 33722 0.69 0.313814
Target:  5'- gUCGauCUGCUCgaucgcgGCGAGgaucaGCGCGCCGGc -3'
miRNA:   3'- gGGC--GACGAGa------CGCUUa----CGCGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 28717 0.69 0.30615
Target:  5'- -gUGCUGCUCgGCuGAGUGCGgcCGCCGc -3'
miRNA:   3'- ggGCGACGAGaCG-CUUACGC--GCGGUc -5'
28102 5' -58.5 NC_005887.1 + 21813 0.69 0.298631
Target:  5'- gUCCGCgGCgCUGCcgg-GCGCGCCGa -3'
miRNA:   3'- -GGGCGaCGaGACGcuuaCGCGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 38556 0.69 0.298631
Target:  5'- gCCGCUGUUCUGCacGAUGCG-GUCGc -3'
miRNA:   3'- gGGCGACGAGACGc-UUACGCgCGGUc -5'
28102 5' -58.5 NC_005887.1 + 26963 0.69 0.291255
Target:  5'- uCCUGCaggccGUUCgGCGAcgGUGUGCCGGu -3'
miRNA:   3'- -GGGCGa----CGAGaCGCUuaCGCGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 14684 0.7 0.276933
Target:  5'- cCCCGCacgaucggGCUCgucGCGGcggGCGgGCCGGg -3'
miRNA:   3'- -GGGCGa-------CGAGa--CGCUua-CGCgCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 33360 0.7 0.269985
Target:  5'- uCCCGaCUGCa--GCGGAUGUgcacGCGCCGGc -3'
miRNA:   3'- -GGGC-GACGagaCGCUUACG----CGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 429 0.7 0.263853
Target:  5'- gCCCGCUGUUgCUGCGcucgaacccucugGCGCGUguGg -3'
miRNA:   3'- -GGGCGACGA-GACGCuua----------CGCGCGguC- -5'
28102 5' -58.5 NC_005887.1 + 37072 0.7 0.256512
Target:  5'- gCgCGCUGCUCggGCGAcUGCGUuUCAGg -3'
miRNA:   3'- -GgGCGACGAGa-CGCUuACGCGcGGUC- -5'
28102 5' -58.5 NC_005887.1 + 4387 0.7 0.243594
Target:  5'- gCCCGUUGaacaagGC-AAUGCGCGCCGGc -3'
miRNA:   3'- -GGGCGACgaga--CGcUUACGCGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 29804 0.7 0.243594
Target:  5'- gCCaguaGCUGgaagUCUGCGggUGUgcgcgGCGCCAGa -3'
miRNA:   3'- -GGg---CGACg---AGACGCuuACG-----CGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 24879 0.71 0.219384
Target:  5'- --aGCUGCaUCUGCGucuucauguUGCGCGUCGGa -3'
miRNA:   3'- gggCGACG-AGACGCuu-------ACGCGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 29186 0.71 0.219384
Target:  5'- uCCCGCUG-UCUGCGc--GCGCGCg-- -3'
miRNA:   3'- -GGGCGACgAGACGCuuaCGCGCGguc -5'
28102 5' -58.5 NC_005887.1 + 29179 0.71 0.213661
Target:  5'- uCuuGCUGCgCUGCGAGgaucUGCGCgGCCu- -3'
miRNA:   3'- -GggCGACGaGACGCUU----ACGCG-CGGuc -5'
28102 5' -58.5 NC_005887.1 + 23428 0.71 0.208621
Target:  5'- gCCGCUGCgagauucggugagcgCUGCGGGcUGCcgGUGCCGGg -3'
miRNA:   3'- gGGCGACGa--------------GACGCUU-ACG--CGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 29637 0.72 0.186942
Target:  5'- uUCUGCUGCUgcGCGAccagcGUGCGCGCguGa -3'
miRNA:   3'- -GGGCGACGAgaCGCU-----UACGCGCGguC- -5'
28102 5' -58.5 NC_005887.1 + 4674 0.72 0.181964
Target:  5'- aCCGCUGCgcagacgGCGAGggucugauggGCGCGCCGa -3'
miRNA:   3'- gGGCGACGaga----CGCUUa---------CGCGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 36836 0.72 0.179034
Target:  5'- gCCUGCUGCggccggugCUGCGGccggugcugcggccgGUGCuGCGCCAu -3'
miRNA:   3'- -GGGCGACGa-------GACGCU---------------UACG-CGCGGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.