miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28103 3' -53.6 NC_005887.1 + 11573 0.66 0.759428
Target:  5'- --cGCGCGcagaaggaacUCGCcgCGCGCAcGGUCGa -3'
miRNA:   3'- agaCGCGCa---------AGUGa-GUGCGUuCCAGC- -5'
28103 3' -53.6 NC_005887.1 + 2484 0.66 0.759428
Target:  5'- -aUGCGCGaggCGCUCAgCGguGagcGGUCGa -3'
miRNA:   3'- agACGCGCaa-GUGAGU-GCguU---CCAGC- -5'
28103 3' -53.6 NC_005887.1 + 29641 0.66 0.738057
Target:  5'- aUCUcGC-CGUcgUCACUCACGCGcGGcgCGa -3'
miRNA:   3'- -AGA-CGcGCA--AGUGAGUGCGUuCCa-GC- -5'
28103 3' -53.6 NC_005887.1 + 24780 0.66 0.727196
Target:  5'- --gGCGUGUUCG-UCGCGCc-GGUCa -3'
miRNA:   3'- agaCGCGCAAGUgAGUGCGuuCCAGc -5'
28103 3' -53.6 NC_005887.1 + 5502 0.66 0.727196
Target:  5'- --cGCGCG-UCGCgauccaGCGCAAGGcugUCGa -3'
miRNA:   3'- agaCGCGCaAGUGag----UGCGUUCC---AGC- -5'
28103 3' -53.6 NC_005887.1 + 11749 0.66 0.716234
Target:  5'- gCUGCGCGagUUGCUCGCGauccGGcUCGa -3'
miRNA:   3'- aGACGCGCa-AGUGAGUGCguu-CC-AGC- -5'
28103 3' -53.6 NC_005887.1 + 25408 0.66 0.716234
Target:  5'- --cGCGCGguugaagCGCUCACGCAucgcgcccGUCGu -3'
miRNA:   3'- agaCGCGCaa-----GUGAGUGCGUuc------CAGC- -5'
28103 3' -53.6 NC_005887.1 + 1709 0.66 0.712928
Target:  5'- gCUGCGCGgcaugcaGCUCACGUucgcguggcucaacGAGGUg- -3'
miRNA:   3'- aGACGCGCaag----UGAGUGCG--------------UUCCAgc -5'
28103 3' -53.6 NC_005887.1 + 32717 0.67 0.682871
Target:  5'- --cGCGCgGUUCACcCACGgCGGGGUa- -3'
miRNA:   3'- agaCGCG-CAAGUGaGUGC-GUUCCAgc -5'
28103 3' -53.6 NC_005887.1 + 26147 0.67 0.682871
Target:  5'- cCUGCGUGUccggUCGCagcgcggccucuUCGCGCAGGuUCGc -3'
miRNA:   3'- aGACGCGCA----AGUG------------AGUGCGUUCcAGC- -5'
28103 3' -53.6 NC_005887.1 + 9782 0.68 0.60376
Target:  5'- -aUGCGCGUcacgCACUgGCGCGAGaacgCGg -3'
miRNA:   3'- agACGCGCAa---GUGAgUGCGUUCca--GC- -5'
28103 3' -53.6 NC_005887.1 + 27373 0.69 0.547796
Target:  5'- cCUGCGCGgccugCGCg-GCGUAGGcGUCGa -3'
miRNA:   3'- aGACGCGCaa---GUGagUGCGUUC-CAGC- -5'
28103 3' -53.6 NC_005887.1 + 5359 0.7 0.504229
Target:  5'- cCUGCGCGU--GCUCGCcgGCGAGcUCGa -3'
miRNA:   3'- aGACGCGCAagUGAGUG--CGUUCcAGC- -5'
28103 3' -53.6 NC_005887.1 + 37404 0.71 0.422141
Target:  5'- gCUGCGCGgUCGCgacugccugCACGCcAGGUgCGg -3'
miRNA:   3'- aGACGCGCaAGUGa--------GUGCGuUCCA-GC- -5'
28103 3' -53.6 NC_005887.1 + 15320 0.72 0.412449
Target:  5'- -gUGCGCGgucgcgCGCUCGC-CGAGGUUGc -3'
miRNA:   3'- agACGCGCaa----GUGAGUGcGUUCCAGC- -5'
28103 3' -53.6 NC_005887.1 + 35486 0.75 0.24967
Target:  5'- cCUGCGCGUUgGCcgaCGuCGCGAGGUCc -3'
miRNA:   3'- aGACGCGCAAgUGa--GU-GCGUUCCAGc -5'
28103 3' -53.6 NC_005887.1 + 39 1.09 0.001123
Target:  5'- uUCUGCGCGUUCACUCACGCAAGGUCGc -3'
miRNA:   3'- -AGACGCGCAAGUGAGUGCGUUCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.