Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28103 | 5' | -47 | NC_005887.1 | + | 34881 | 0.76 | 0.549619 |
Target: 5'- gAUC-GCCUUGUCGUUCGCGCugcccUUCu -3' miRNA: 3'- -UAGuUGGAGCAGCAAGUGCGuuu--AAG- -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 39729 | 0.66 | 0.972061 |
Target: 5'- cUCAuCCUCGcgCGUUCuGCGCAcAUUUc -3' miRNA: 3'- uAGUuGGAGCa-GCAAG-UGCGUuUAAG- -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 22418 | 0.66 | 0.971403 |
Target: 5'- --gAACCUCGUCGUgcugcuguucugCAUGUGGAUUg -3' miRNA: 3'- uagUUGGAGCAGCAa-----------GUGCGUUUAAg -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 33045 | 0.66 | 0.968661 |
Target: 5'- uUCAuCCUCuaaGUUGUUCACGCGc---- -3' miRNA: 3'- uAGUuGGAG---CAGCAAGUGCGUuuaag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 34571 | 0.67 | 0.956717 |
Target: 5'- uGUCGAUCgUCG-CGUUCACGUAGc--- -3' miRNA: 3'- -UAGUUGG-AGCaGCAAGUGCGUUuaag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 27026 | 0.67 | 0.952127 |
Target: 5'- -gCAACCUCGgCGagCGCGCGAc--- -3' miRNA: 3'- uaGUUGGAGCaGCaaGUGCGUUuaag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 14452 | 0.67 | 0.950203 |
Target: 5'- gAUCGACCagaccgugcaaggCGUCGUgucgggccUCGCGCAGAUc- -3' miRNA: 3'- -UAGUUGGa------------GCAGCA--------AGUGCGUUUAag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 27130 | 0.67 | 0.947221 |
Target: 5'- cGUCGA-CUCGUCGgcgaUCACGCGGc--- -3' miRNA: 3'- -UAGUUgGAGCAGCa---AGUGCGUUuaag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 24419 | 0.67 | 0.947221 |
Target: 5'- -aCGAgCUCGuUCGUgcgCACGCAGGUc- -3' miRNA: 3'- uaGUUgGAGC-AGCAa--GUGCGUUUAag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 23938 | 0.68 | 0.930565 |
Target: 5'- cGUCGGCCUCGcggCGUcugcgCACGCAc---- -3' miRNA: 3'- -UAGUUGGAGCa--GCAa----GUGCGUuuaag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 34449 | 0.68 | 0.924358 |
Target: 5'- gGUC-GCCUCGaagucgucuUCGUUCGCGCGGc--- -3' miRNA: 3'- -UAGuUGGAGC---------AGCAAGUGCGUUuaag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 35756 | 0.71 | 0.835235 |
Target: 5'- cUCGGCUUC-UCGUUCACGCGc---- -3' miRNA: 3'- uAGUUGGAGcAGCAAGUGCGUuuaag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 37106 | 0.71 | 0.815356 |
Target: 5'- -aCAGCCUCGgCGaUCGCGCGGccgUCg -3' miRNA: 3'- uaGUUGGAGCaGCaAGUGCGUUua-AG- -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 38313 | 0.7 | 0.863121 |
Target: 5'- cUCGcCCUUGUCGUUCAgGCcaccccAAUUCa -3' miRNA: 3'- uAGUuGGAGCAGCAAGUgCGu-----UUAAG- -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 26167 | 0.69 | 0.910959 |
Target: 5'- -gCGGCCUC----UUCGCGCAGGUUCg -3' miRNA: 3'- uaGUUGGAGcagcAAGUGCGUUUAAG- -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 25230 | 0.68 | 0.917823 |
Target: 5'- -gUAGCUcggCGUCGUUCA-GCGGAUUCc -3' miRNA: 3'- uaGUUGGa--GCAGCAAGUgCGUUUAAG- -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 41241 | 0.68 | 0.941995 |
Target: 5'- uUCGAgCUUGUCGUUCA-GCAGGc-- -3' miRNA: 3'- uAGUUgGAGCAGCAAGUgCGUUUaag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 1267 | 0.67 | 0.964976 |
Target: 5'- cUCuGCCUCGUCcacgagCGCGCGGAUc- -3' miRNA: 3'- uAGuUGGAGCAGcaa---GUGCGUUUAag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 32871 | 0.66 | 0.972061 |
Target: 5'- gGUCGGCCggGUCGUUCGuCGCc----- -3' miRNA: 3'- -UAGUUGGagCAGCAAGU-GCGuuuaag -5' |
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28103 | 5' | -47 | NC_005887.1 | + | 76 | 1.08 | 0.005958 |
Target: 5'- aAUCAACCUCGUCGUUCACGCAAAUUCc -3' miRNA: 3'- -UAGUUGGAGCAGCAAGUGCGUUUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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