miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28105 3' -57.8 NC_005887.1 + 2719 1.06 0.000666
Target:  5'- gAGCCGCGCGACGACGGACUGACGUAUg -3'
miRNA:   3'- -UCGGCGCGCUGCUGCCUGACUGCAUA- -5'
28105 3' -57.8 NC_005887.1 + 18022 0.79 0.072971
Target:  5'- cGCCGCGCGcuuacgcGCGcCGGACUGACGg-- -3'
miRNA:   3'- uCGGCGCGC-------UGCuGCCUGACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 40536 0.75 0.140531
Target:  5'- cGCgGCaGCGACGACGGuCUGGCGc-- -3'
miRNA:   3'- uCGgCG-CGCUGCUGCCuGACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 7901 0.73 0.189899
Target:  5'- aGGCCG-GCGACGAucugcaguaaCGGACUGACa--- -3'
miRNA:   3'- -UCGGCgCGCUGCU----------GCCUGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 26969 0.73 0.200373
Target:  5'- aGGCCGUuCGGCGACGGugUGcCGg-- -3'
miRNA:   3'- -UCGGCGcGCUGCUGCCugACuGCaua -5'
28105 3' -57.8 NC_005887.1 + 29540 0.72 0.211345
Target:  5'- cGUCGCGCG-CGACGGcCUGGCa--- -3'
miRNA:   3'- uCGGCGCGCuGCUGCCuGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 15494 0.71 0.241678
Target:  5'- uGGCCGCGCGucaGAUGGACgccggccaguuuccgGACGUc- -3'
miRNA:   3'- -UCGGCGCGCug-CUGCCUGa--------------CUGCAua -5'
28105 3' -57.8 NC_005887.1 + 32681 0.71 0.260494
Target:  5'- uGCCGCuCGACGggaagcucguguGCGGGCUGcACGUGc -3'
miRNA:   3'- uCGGCGcGCUGC------------UGCCUGAC-UGCAUa -5'
28105 3' -57.8 NC_005887.1 + 42105 0.71 0.267254
Target:  5'- uGCCGCGuCGACGAacgaGGACUuguGGCGa-- -3'
miRNA:   3'- uCGGCGC-GCUGCUg---CCUGA---CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 1140 0.71 0.267254
Target:  5'- aAGCCGCGCGugcGCGugaaGGAuCUGACGg-- -3'
miRNA:   3'- -UCGGCGCGC---UGCug--CCU-GACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 12198 0.7 0.274155
Target:  5'- uGgCGCGCGACGGCGGcCUGcuCGUc- -3'
miRNA:   3'- uCgGCGCGCUGCUGCCuGACu-GCAua -5'
28105 3' -57.8 NC_005887.1 + 15746 0.7 0.281199
Target:  5'- cGGCCGCGCGGCGGUGaGCUGGuCGa-- -3'
miRNA:   3'- -UCGGCGCGCUGCUGCcUGACU-GCaua -5'
28105 3' -57.8 NC_005887.1 + 7376 0.7 0.288385
Target:  5'- uGUCG-GCGGCGACGGAC-GGCGa-- -3'
miRNA:   3'- uCGGCgCGCUGCUGCCUGaCUGCaua -5'
28105 3' -57.8 NC_005887.1 + 14823 0.7 0.295714
Target:  5'- cGGCCGCGacgcuGAUGGCGGGCacguucgcgGGCGUGc -3'
miRNA:   3'- -UCGGCGCg----CUGCUGCCUGa--------CUGCAUa -5'
28105 3' -57.8 NC_005887.1 + 3065 0.7 0.309271
Target:  5'- uGGCCgcagGCGCGuuGACGGACgaagaagcgacgGACGUGg -3'
miRNA:   3'- -UCGG----CGCGCugCUGCCUGa-----------CUGCAUa -5'
28105 3' -57.8 NC_005887.1 + 30275 0.7 0.310806
Target:  5'- aGGCCGCGaCG-CGGCGuGGCUGGCc--- -3'
miRNA:   3'- -UCGGCGC-GCuGCUGC-CUGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 23503 0.69 0.326476
Target:  5'- aAGCgGCGgGAUGGCGGGCggcugcGACGa-- -3'
miRNA:   3'- -UCGgCGCgCUGCUGCCUGa-----CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 16474 0.69 0.341899
Target:  5'- cGaCCGCGCGGCaggauccGGCGGGCUGGuCGg-- -3'
miRNA:   3'- uC-GGCGCGCUG-------CUGCCUGACU-GCaua -5'
28105 3' -57.8 NC_005887.1 + 13394 0.69 0.342725
Target:  5'- aGGCCG-GCG-CGGCGGACgucGGCGg-- -3'
miRNA:   3'- -UCGGCgCGCuGCUGCCUGa--CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 18479 0.69 0.351065
Target:  5'- cGUCGUGCuGACGACGGcGCcgcGGCGUAg -3'
miRNA:   3'- uCGGCGCG-CUGCUGCC-UGa--CUGCAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.