miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28106 3' -59.7 NC_005887.1 + 24662 0.66 0.40123
Target:  5'- -aUCCGcuUCGACauuguccaGCC-GCGGCCGGCa -3'
miRNA:   3'- gcAGGC--AGUUGcg------CGGaCGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 3358 0.67 0.392248
Target:  5'- gCGUCCGUCAAgGCGuaCCUGCaGggAGUg -3'
miRNA:   3'- -GCAGGCAGUUgCGC--GGACGcCggUCG- -5'
28106 3' -59.7 NC_005887.1 + 33640 0.67 0.392248
Target:  5'- --cCCG-UAGCGCGCgCUGCGcUCGGCg -3'
miRNA:   3'- gcaGGCaGUUGCGCG-GACGCcGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 13228 0.67 0.383397
Target:  5'- cCG-CUGUCuGCGCGCgC-GCGGCaAGCg -3'
miRNA:   3'- -GCaGGCAGuUGCGCG-GaCGCCGgUCG- -5'
28106 3' -59.7 NC_005887.1 + 21658 0.67 0.383397
Target:  5'- uCGUUCGUgGuCGUGCCgacGauGCCGGCa -3'
miRNA:   3'- -GCAGGCAgUuGCGCGGa--CgcCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 2485 0.67 0.38252
Target:  5'- -aUUCGUCGGCGCgggcuucGCCUcGaaGCCAGCg -3'
miRNA:   3'- gcAGGCAGUUGCG-------CGGA-CgcCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 2262 0.67 0.374681
Target:  5'- -aUCgGUUuGCGCuGCCcgaucaccGCGGCCGGCg -3'
miRNA:   3'- gcAGgCAGuUGCG-CGGa-------CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 26782 0.67 0.374681
Target:  5'- gGUCUauGUCGA-GCuGCCcGCGGCCGcGCg -3'
miRNA:   3'- gCAGG--CAGUUgCG-CGGaCGCCGGU-CG- -5'
28106 3' -59.7 NC_005887.1 + 12669 0.67 0.366099
Target:  5'- -cUgCGUCAGCaCGCCgagcgucGCGGCCGGg -3'
miRNA:   3'- gcAgGCAGUUGcGCGGa------CGCCGGUCg -5'
28106 3' -59.7 NC_005887.1 + 4699 0.67 0.366099
Target:  5'- -aUCC-UUGAuCGCGCCgGCGGCCAccgGCg -3'
miRNA:   3'- gcAGGcAGUU-GCGCGGaCGCCGGU---CG- -5'
28106 3' -59.7 NC_005887.1 + 18613 0.67 0.365248
Target:  5'- gGUUCGUugcucggCAGCGCGaUCgGCGGCCcGCu -3'
miRNA:   3'- gCAGGCA-------GUUGCGC-GGaCGCCGGuCG- -5'
28106 3' -59.7 NC_005887.1 + 40233 0.67 0.357654
Target:  5'- uCGUgCCGUC-GCGCaGCUcacacGCGGCgAGCg -3'
miRNA:   3'- -GCA-GGCAGuUGCG-CGGa----CGCCGgUCG- -5'
28106 3' -59.7 NC_005887.1 + 29719 0.67 0.356817
Target:  5'- cCGUCgCGUCGcaggaucACGCGCCgcGCGuGCaCGGUc -3'
miRNA:   3'- -GCAG-GCAGU-------UGCGCGGa-CGC-CG-GUCG- -5'
28106 3' -59.7 NC_005887.1 + 27417 0.67 0.349346
Target:  5'- aCGcUCGUCuGCGCGCCgcugcgcGUGGCgCAGUc -3'
miRNA:   3'- -GCaGGCAGuUGCGCGGa------CGCCG-GUCG- -5'
28106 3' -59.7 NC_005887.1 + 19427 0.67 0.349346
Target:  5'- --aUCGUCGccgcACGCGUCUGCugcgcgagcauGGUCAGCu -3'
miRNA:   3'- gcaGGCAGU----UGCGCGGACG-----------CCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 13280 0.68 0.341177
Target:  5'- uCGUCuggCGUCAGCaGCgacacacgucgGCCgGCGGCCuGCu -3'
miRNA:   3'- -GCAG---GCAGUUG-CG-----------CGGaCGCCGGuCG- -5'
28106 3' -59.7 NC_005887.1 + 9250 0.68 0.341177
Target:  5'- gCGUCgG-CGAuCGCGUCUaucugugcacgGCGGUCGGCa -3'
miRNA:   3'- -GCAGgCaGUU-GCGCGGA-----------CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 34287 0.68 0.325255
Target:  5'- uG-CCGUCGcCGUGCggcugaCUGCGGgCGGCa -3'
miRNA:   3'- gCaGGCAGUuGCGCG------GACGCCgGUCG- -5'
28106 3' -59.7 NC_005887.1 + 16221 0.68 0.317504
Target:  5'- uCGcUCgCGcacUCGGCGCGCCgGUGGUUGGCg -3'
miRNA:   3'- -GC-AG-GC---AGUUGCGCGGaCGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 39993 0.68 0.317504
Target:  5'- gCGU-CGUCGACGCGCC--CGGCUcgaucugcgcGGCa -3'
miRNA:   3'- -GCAgGCAGUUGCGCGGacGCCGG----------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.