Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28108 | 5' | -51.6 | NC_005887.1 | + | 5412 | 0.67 | 0.794596 |
Target: 5'- cGGcgGGCGGcgccgcaGCGACc-GGCGc-GACCa -3' miRNA: 3'- -CCuaCCGCU-------UGCUGuaCCGCuuCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 3046 | 0.68 | 0.77522 |
Target: 5'- cGGccaAUGaCGAACGACGacGCGAAGAUCc -3' miRNA: 3'- -CC---UACcGCUUGCUGUacCGCUUCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 27394 | 0.68 | 0.764789 |
Target: 5'- -cGUGGCGcaguCGACGUGGCcggacGAGugCg -3' miRNA: 3'- ccUACCGCuu--GCUGUACCGc----UUCugG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 14706 | 0.68 | 0.743502 |
Target: 5'- cGGcgGGCGGGCcgGGCGcGGCGAucgcgcAGGCg -3' miRNA: 3'- -CCuaCCGCUUG--CUGUaCCGCU------UCUGg -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 42070 | 0.68 | 0.732674 |
Target: 5'- ---cGGCGAcacuCGACGUGGgcCGcAGGCCg -3' miRNA: 3'- ccuaCCGCUu---GCUGUACC--GCuUCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 280 | 0.68 | 0.732673 |
Target: 5'- -cGUGGCgcggGAACuGCGUGGCGugaucagcGAGGCCg -3' miRNA: 3'- ccUACCG----CUUGcUGUACCGC--------UUCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 16167 | 0.69 | 0.721737 |
Target: 5'- -aGUGcGCGAGCGAuCGaGGCGAaccugcgcgaagAGGCCg -3' miRNA: 3'- ccUAC-CGCUUGCU-GUaCCGCU------------UCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 38242 | 0.69 | 0.699593 |
Target: 5'- gGGAUGGuCGAGCgcucgaucGACAcgcuguugucagUGGCGAcGACUu -3' miRNA: 3'- -CCUACC-GCUUG--------CUGU------------ACCGCUuCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 17043 | 0.7 | 0.643223 |
Target: 5'- cGGAUGcGC-AGCGGCAcgcuugGGCGGAcGCCg -3' miRNA: 3'- -CCUAC-CGcUUGCUGUa-----CCGCUUcUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 1555 | 0.7 | 0.643223 |
Target: 5'- aGGAcUGGCu--CGACAUguucGGCGAccuGGGCCg -3' miRNA: 3'- -CCU-ACCGcuuGCUGUA----CCGCU---UCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 25727 | 0.7 | 0.631872 |
Target: 5'- cGAUGGCGAcgcgcuGCGGCuggcGGUGAAGcucaACCu -3' miRNA: 3'- cCUACCGCU------UGCUGua--CCGCUUC----UGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 19824 | 0.7 | 0.631871 |
Target: 5'- cGGG-GGCGucGACGACAcacUGGCGAuccaagAGugCa -3' miRNA: 3'- -CCUaCCGC--UUGCUGU---ACCGCU------UCugG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 2339 | 0.7 | 0.620519 |
Target: 5'- -uAUGGCGAucCGGCG-GGCGAccagcgcucgcAGGCCg -3' miRNA: 3'- ccUACCGCUu-GCUGUaCCGCU-----------UCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 9478 | 0.71 | 0.609178 |
Target: 5'- cGGUGGCGAcgaACGACccGGCc--GACCc -3' miRNA: 3'- cCUACCGCU---UGCUGuaCCGcuuCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 41727 | 0.71 | 0.597858 |
Target: 5'- cGGgcGGCGAuccgauccCGGCGcgcgggcucUGGuCGAAGACCa -3' miRNA: 3'- -CCuaCCGCUu-------GCUGU---------ACC-GCUUCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 40805 | 0.72 | 0.552982 |
Target: 5'- ---cGGCGAucgccuCGACGcgGGCGgcGACCu -3' miRNA: 3'- ccuaCCGCUu-----GCUGUa-CCGCuuCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 3779 | 0.72 | 0.518906 |
Target: 5'- cGGAUcgcggucGGCGcgcggcucGACGGCGUGGUaGAAGAUCg -3' miRNA: 3'- -CCUA-------CCGC--------UUGCUGUACCG-CUUCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 7364 | 0.73 | 0.498434 |
Target: 5'- cGGAcGGCGAcACGACGacccacagcgGGCGGccgGGGCCg -3' miRNA: 3'- -CCUaCCGCU-UGCUGUa---------CCGCU---UCUGG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 36033 | 0.73 | 0.477284 |
Target: 5'- ---gGGCGAACG-CggGGCGAAGGgCa -3' miRNA: 3'- ccuaCCGCUUGCuGuaCCGCUUCUgG- -5' |
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28108 | 5' | -51.6 | NC_005887.1 | + | 17402 | 0.73 | 0.477283 |
Target: 5'- --cUGGuCGAucacgucgGCGGCAUGGCGAAGAa- -3' miRNA: 3'- ccuACC-GCU--------UGCUGUACCGCUUCUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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