miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28109 5' -60.8 NC_005887.1 + 40253 0.66 0.340669
Target:  5'- cUUCGGCaauauguUCGuGCUGCCGCuggccggcaaGucGGUGCCg -3'
miRNA:   3'- -AAGCUG-------GGC-CGACGGCG----------CuuCCACGG- -5'
28109 5' -60.8 NC_005887.1 + 12594 0.68 0.273972
Target:  5'- -cCGACCCGGCcGCgaCGCucGGcGUGCUg -3'
miRNA:   3'- aaGCUGGGCCGaCG--GCGcuUC-CACGG- -5'
28109 5' -60.8 NC_005887.1 + 27043 0.67 0.280213
Target:  5'- -gCGACCgCGcacGCUGCCGCccgacuucuucacGAAcucGGUGCCg -3'
miRNA:   3'- aaGCUGG-GC---CGACGGCG-------------CUU---CCACGG- -5'
28109 5' -60.8 NC_005887.1 + 15631 0.67 0.287993
Target:  5'- -gCGGCCgGGCUcGCCGaucAGGGcGCCg -3'
miRNA:   3'- aaGCUGGgCCGA-CGGCgc-UUCCaCGG- -5'
28109 5' -60.8 NC_005887.1 + 42076 0.67 0.295213
Target:  5'- aUCGACgaGcGCUGUCGCGuGGGgcgcgaUGCCg -3'
miRNA:   3'- aAGCUGggC-CGACGGCGCuUCC------ACGG- -5'
28109 5' -60.8 NC_005887.1 + 21103 0.67 0.317714
Target:  5'- aUCGGCgCGGUcGCCGCaaacacGGUGCUc -3'
miRNA:   3'- aAGCUGgGCCGaCGGCGcuu---CCACGG- -5'
28109 5' -60.8 NC_005887.1 + 13093 0.66 0.325496
Target:  5'- cUCGAUCgCGGagUGCUGCaGGGcGUGCCg -3'
miRNA:   3'- aAGCUGG-GCCg-ACGGCGcUUC-CACGG- -5'
28109 5' -60.8 NC_005887.1 + 12173 0.66 0.33262
Target:  5'- -gUGACgUGGCUGCagaacaugcagacCGCGAAGGacagcGCCg -3'
miRNA:   3'- aaGCUGgGCCGACG-------------GCGCUUCCa----CGG- -5'
28109 5' -60.8 NC_005887.1 + 23004 0.66 0.338239
Target:  5'- aUCGACgCCGGUcGCUucugcgaggcggugGCGAAGGUaucgaacguauggGCCa -3'
miRNA:   3'- aAGCUG-GGCCGaCGG--------------CGCUUCCA-------------CGG- -5'
28109 5' -60.8 NC_005887.1 + 26414 0.68 0.267169
Target:  5'- gUCGAgCUGGCgGCCGCGcGGGaacGCg -3'
miRNA:   3'- aAGCUgGGCCGaCGGCGCuUCCa--CGg -5'
28109 5' -60.8 NC_005887.1 + 41935 0.69 0.235189
Target:  5'- cUCGcagcugagcuGCCCGGCgUGCuCGCGu-GGUGCg -3'
miRNA:   3'- aAGC----------UGGGCCG-ACG-GCGCuuCCACGg -5'
28109 5' -60.8 NC_005887.1 + 3964 0.69 0.222745
Target:  5'- gUCGACCCGccGUUGCuCGCGAacgaggaGGcGUGCUu -3'
miRNA:   3'- aAGCUGGGC--CGACG-GCGCU-------UC-CACGG- -5'
28109 5' -60.8 NC_005887.1 + 19919 0.75 0.083493
Target:  5'- aUUCGACCCugacGCUGCCGCcc-GGUGUCa -3'
miRNA:   3'- -AAGCUGGGc---CGACGGCGcuuCCACGG- -5'
28109 5' -60.8 NC_005887.1 + 29360 0.72 0.12702
Target:  5'- --aGaACCCGGCaGCCGCGAGcGGcaUGCCc -3'
miRNA:   3'- aagC-UGGGCCGaCGGCGCUU-CC--ACGG- -5'
28109 5' -60.8 NC_005887.1 + 5822 0.72 0.12702
Target:  5'- aUCGAgUCGGCgcggGUCGCGAAGG-GCg -3'
miRNA:   3'- aAGCUgGGCCGa---CGGCGCUUCCaCGg -5'
28109 5' -60.8 NC_005887.1 + 5748 0.72 0.12702
Target:  5'- -cCGGgauUCCGGCcgagGCCGCGAAGGcgcugGCCg -3'
miRNA:   3'- aaGCU---GGGCCGa---CGGCGCUUCCa----CGG- -5'
28109 5' -60.8 NC_005887.1 + 8697 0.72 0.128429
Target:  5'- --gGGCCCGGCgauccGCCGCGgcGGUaagcgcuucgucgcgGCCa -3'
miRNA:   3'- aagCUGGGCCGa----CGGCGCuuCCA---------------CGG- -5'
28109 5' -60.8 NC_005887.1 + 1782 0.72 0.137949
Target:  5'- cUCGACCUGcGCgucgGCCGCuacccGAAGGacgUGCCg -3'
miRNA:   3'- aAGCUGGGC-CGa---CGGCG-----CUUCC---ACGG- -5'
28109 5' -60.8 NC_005887.1 + 14690 0.7 0.180861
Target:  5'- -aCGAUCgGGCUcGUCGCGgcGGgcggGCCg -3'
miRNA:   3'- aaGCUGGgCCGA-CGGCGCuuCCa---CGG- -5'
28109 5' -60.8 NC_005887.1 + 21523 0.7 0.203251
Target:  5'- -aCGACgCCGGCUGCCGgGAaauucacgacgcugcAGGcGaCCg -3'
miRNA:   3'- aaGCUG-GGCCGACGGCgCU---------------UCCaC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.