miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28109 5' -60.8 NC_005887.1 + 1980 0.68 0.253973
Target:  5'- -aCGccGCCCGGCUGCCGaaaGAAcGcGUaGCCc -3'
miRNA:   3'- aaGC--UGGGCCGACGGCg--CUU-C-CA-CGG- -5'
28109 5' -60.8 NC_005887.1 + 14499 0.68 0.253973
Target:  5'- gUCGAUCgCGGUUGCgCGCGucGGGU-CCg -3'
miRNA:   3'- aAGCUGG-GCCGACG-GCGCu-UCCAcGG- -5'
28109 5' -60.8 NC_005887.1 + 14711 0.68 0.240698
Target:  5'- -gCGACgggcagcaccgcgCCGGCUGCCGUGAGcgcgcccucgacGGcGCCg -3'
miRNA:   3'- aaGCUG-------------GGCCGACGGCGCUU------------CCaCGG- -5'
28109 5' -60.8 NC_005887.1 + 41935 0.69 0.235189
Target:  5'- cUCGcagcugagcuGCCCGGCgUGCuCGCGu-GGUGCg -3'
miRNA:   3'- aAGC----------UGGGCCG-ACG-GCGCuuCCACGg -5'
28109 5' -60.8 NC_005887.1 + 3964 0.69 0.222745
Target:  5'- gUCGACCCGccGUUGCuCGCGAacgaggaGGcGUGCUu -3'
miRNA:   3'- aAGCUGGGC--CGACG-GCGCU-------UC-CACGG- -5'
28109 5' -60.8 NC_005887.1 + 11362 0.69 0.211972
Target:  5'- -cCGAgCCGGCcGCUGCGAgcagAGGUagaaacGCCa -3'
miRNA:   3'- aaGCUgGGCCGaCGGCGCU----UCCA------CGG- -5'
28109 5' -60.8 NC_005887.1 + 21523 0.7 0.203251
Target:  5'- -aCGACgCCGGCUGCCGgGAaauucacgacgcugcAGGcGaCCg -3'
miRNA:   3'- aaGCUG-GGCCGACGGCgCU---------------UCCaC-GG- -5'
28109 5' -60.8 NC_005887.1 + 14690 0.7 0.180861
Target:  5'- -aCGAUCgGGCUcGUCGCGgcGGgcggGCCg -3'
miRNA:   3'- aaGCUGGgCCGA-CGGCGCuuCCa---CGG- -5'
28109 5' -60.8 NC_005887.1 + 3036 0.71 0.166424
Target:  5'- -gCGACggacguggagucgCCGGCgaggaugGUCGCGgcGGUGCCg -3'
miRNA:   3'- aaGCUG-------------GGCCGa------CGGCGCuuCCACGG- -5'
28109 5' -60.8 NC_005887.1 + 34915 0.71 0.158094
Target:  5'- -gCGAUcaagUCGGUUGCCGuCGAAGGUuggGCCa -3'
miRNA:   3'- aaGCUG----GGCCGACGGC-GCUUCCA---CGG- -5'
28109 5' -60.8 NC_005887.1 + 1782 0.72 0.137949
Target:  5'- cUCGACCUGcGCgucgGCCGCuacccGAAGGacgUGCCg -3'
miRNA:   3'- aAGCUGGGC-CGa---CGGCG-----CUUCC---ACGG- -5'
28109 5' -60.8 NC_005887.1 + 8697 0.72 0.128429
Target:  5'- --gGGCCCGGCgauccGCCGCGgcGGUaagcgcuucgucgcgGCCa -3'
miRNA:   3'- aagCUGGGCCGa----CGGCGCuuCCA---------------CGG- -5'
28109 5' -60.8 NC_005887.1 + 29360 0.72 0.12702
Target:  5'- --aGaACCCGGCaGCCGCGAGcGGcaUGCCc -3'
miRNA:   3'- aagC-UGGGCCGaCGGCGCUU-CC--ACGG- -5'
28109 5' -60.8 NC_005887.1 + 5822 0.72 0.12702
Target:  5'- aUCGAgUCGGCgcggGUCGCGAAGG-GCg -3'
miRNA:   3'- aAGCUgGGCCGa---CGGCGCUUCCaCGg -5'
28109 5' -60.8 NC_005887.1 + 5748 0.72 0.12702
Target:  5'- -cCGGgauUCCGGCcgagGCCGCGAAGGcgcugGCCg -3'
miRNA:   3'- aaGCU---GGGCCGa---CGGCGCUUCCa----CGG- -5'
28109 5' -60.8 NC_005887.1 + 40259 0.73 0.10753
Target:  5'- cUCGACCUGGCcgGCgGCGAuucccuucGUGCCg -3'
miRNA:   3'- aAGCUGGGCCGa-CGgCGCUuc------CACGG- -5'
28109 5' -60.8 NC_005887.1 + 28523 0.74 0.098871
Target:  5'- -gCGGCCCGGCaacaaGCCGaCGAAGG-GUCa -3'
miRNA:   3'- aaGCUGGGCCGa----CGGC-GCUUCCaCGG- -5'
28109 5' -60.8 NC_005887.1 + 3938 0.74 0.096134
Target:  5'- gUCGuauGCCgGGCUGCCGCcguacacaucGucGGUGCCg -3'
miRNA:   3'- aAGC---UGGgCCGACGGCG----------CuuCCACGG- -5'
28109 5' -60.8 NC_005887.1 + 19919 0.75 0.083493
Target:  5'- aUUCGACCCugacGCUGCCGCcc-GGUGUCa -3'
miRNA:   3'- -AAGCUGGGc---CGACGGCGcuuCCACGG- -5'
28109 5' -60.8 NC_005887.1 + 24970 0.77 0.056006
Target:  5'- -cCGAUCCGGCUGCUGCGAAGaaGaCCg -3'
miRNA:   3'- aaGCUGGGCCGACGGCGCUUCcaC-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.