miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2811 5' -55.9 NC_001491.2 + 145159 0.66 0.907388
Target:  5'- cGUCCAUCGAgGACGAGGaCGaGGaCGa -3'
miRNA:   3'- uCGGGUAGCUgUUGCUUC-GCaCCcGU- -5'
2811 5' -55.9 NC_001491.2 + 128328 0.66 0.89458
Target:  5'- -cCCCA-CGGCAcGCG-GGUGUGGGCu -3'
miRNA:   3'- ucGGGUaGCUGU-UGCuUCGCACCCGu -5'
2811 5' -55.9 NC_001491.2 + 148782 0.66 0.89458
Target:  5'- gGGCUCggCGGCGGgGAgccucGGUGaUGGGCAg -3'
miRNA:   3'- -UCGGGuaGCUGUUgCU-----UCGC-ACCCGU- -5'
2811 5' -55.9 NC_001491.2 + 30660 0.66 0.887827
Target:  5'- gGGCCCAUUcuauGCAACaGAGGUGgaaucGGGCu -3'
miRNA:   3'- -UCGGGUAGc---UGUUG-CUUCGCa----CCCGu -5'
2811 5' -55.9 NC_001491.2 + 146396 0.66 0.887827
Target:  5'- uGGCCg--CGGCAGCGGcGGCcUGGGCc -3'
miRNA:   3'- -UCGGguaGCUGUUGCU-UCGcACCCGu -5'
2811 5' -55.9 NC_001491.2 + 66302 0.66 0.883665
Target:  5'- aAGCCCcaacgcguuacccucAUCaGACAACGAcaAGgGUGGGa- -3'
miRNA:   3'- -UCGGG---------------UAG-CUGUUGCU--UCgCACCCgu -5'
2811 5' -55.9 NC_001491.2 + 119004 0.67 0.873639
Target:  5'- aGGCCCGcuUCGACcuagcgguCGAAGCGcggUGGGgAu -3'
miRNA:   3'- -UCGGGU--AGCUGuu------GCUUCGC---ACCCgU- -5'
2811 5' -55.9 NC_001491.2 + 55089 0.67 0.866214
Target:  5'- aAGCCCccgcCGAcCAGCGAcGCGguguacacgUGGGCAc -3'
miRNA:   3'- -UCGGGua--GCU-GUUGCUuCGC---------ACCCGU- -5'
2811 5' -55.9 NC_001491.2 + 147607 0.67 0.850732
Target:  5'- aAGCCgCGUCGcuggGCcGCGGAGUGUG-GCAg -3'
miRNA:   3'- -UCGG-GUAGC----UGuUGCUUCGCACcCGU- -5'
2811 5' -55.9 NC_001491.2 + 143879 0.67 0.840234
Target:  5'- cAGCCCAcacuaUCGAUugugauuggccguuGAUGAugGGCGgUGGGCGu -3'
miRNA:   3'- -UCGGGU-----AGCUG--------------UUGCU--UCGC-ACCCGU- -5'
2811 5' -55.9 NC_001491.2 + 122842 0.67 0.834447
Target:  5'- cGGCCCuccgCGAgcuguauuuccuCGGCGggGCGUGGaaucGCGg -3'
miRNA:   3'- -UCGGGua--GCU------------GUUGCuuCGCACC----CGU- -5'
2811 5' -55.9 NC_001491.2 + 15851 0.68 0.826022
Target:  5'- uGGUCUuccUCGucCAGCGGAGCuUGGGCGg -3'
miRNA:   3'- -UCGGGu--AGCu-GUUGCUUCGcACCCGU- -5'
2811 5' -55.9 NC_001491.2 + 1543 0.68 0.823459
Target:  5'- cAGCCCAgCGAUGcGCGGcgcccccauugggcGGCGgUGGGCAc -3'
miRNA:   3'- -UCGGGUaGCUGU-UGCU--------------UCGC-ACCCGU- -5'
2811 5' -55.9 NC_001491.2 + 61830 0.68 0.800608
Target:  5'- gAGUgCGUUGACAugGAAGUGggaguacuaguugggGGGCu -3'
miRNA:   3'- -UCGgGUAGCUGUugCUUCGCa--------------CCCGu -5'
2811 5' -55.9 NC_001491.2 + 137746 0.69 0.785094
Target:  5'- cGCCCGgcgggCGGCGGgcgcccgcgggucccCGggGCG-GGGCGg -3'
miRNA:   3'- uCGGGUa----GCUGUU---------------GCuuCGCaCCCGU- -5'
2811 5' -55.9 NC_001491.2 + 115556 0.69 0.752906
Target:  5'- gAGCUCAUCGACAAccagcuguucccCGAGGCcUGGcGCc -3'
miRNA:   3'- -UCGGGUAGCUGUU------------GCUUCGcACC-CGu -5'
2811 5' -55.9 NC_001491.2 + 140267 0.7 0.709456
Target:  5'- uGgCCGUCGACGGCGAggaguccgAGCGgggacggggacggGGGCGg -3'
miRNA:   3'- uCgGGUAGCUGUUGCU--------UCGCa------------CCCGU- -5'
2811 5' -55.9 NC_001491.2 + 137504 0.7 0.703414
Target:  5'- uAGCUgGUCGAcCAGgGggGCGagGGGCu -3'
miRNA:   3'- -UCGGgUAGCU-GUUgCuuCGCa-CCCGu -5'
2811 5' -55.9 NC_001491.2 + 100420 0.71 0.642109
Target:  5'- aGGCCCAgucUGACGAgGAgcAGC-UGGGCAa -3'
miRNA:   3'- -UCGGGUa--GCUGUUgCU--UCGcACCCGU- -5'
2811 5' -55.9 NC_001491.2 + 119358 0.72 0.605067
Target:  5'- cGCCCAUCauCAACGGccaaucacaaucgauAGUGUGGGCu -3'
miRNA:   3'- uCGGGUAGcuGUUGCU---------------UCGCACCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.